Gene HMPREF0424_0613 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0613 
Symbol 
ID8709437 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp677118 
End bp679001 
Gene Length1884 bp 
Protein Length627 aa 
Translation table11 
GC content38% 
IMG OID646482722 
Productcobalt ABC transporter, ATP-binding protein 
Protein accessionYP_003373848 
Protein GI283783094 
COG category[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase 
TIGRFAM ID[TIGR01166] cobalt transport protein ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCTTTGC TTGAGTTAAA AGATGTGTCT TTTAAGTATG TGAATCGGAA TAAAGATGAT 
TCTTTAGACT CTTCAAAGGC ACAAGATTCC ACTTTTGCAC TAAAAGATGT AAGTCTTAGC
GTAGAATCTG GCGAATTTGT GGGAATTATT GGTCCTTCTG GCTCTGGAAA AACAACTCTT
GCTTCGCTTT TTTCTGGCGC GATTCCGCAT CATTATTCTG GCGAACTTTT AGGAAGCGTT
AAGATTGCGG GTCAAGACAC TAACAATCTT GCTTTAACTA ACATTGCTTG CTTGGTTGGA
TCTGTTATTC AAGATATTGA TGCGCAAATG GTTGCCGCAA ATGTTGAAGA TGAGATTCTT
TTTGGCTTAG AAAATTTTGG CGTTGCGCAT AGCGAAATAC CAAGTCGAAT AGATGAAGCT
TTGCAAATTG TTGGCATTAG TGATTTGCGT AACCGTGATT TAGACACTTT GTCTGGAGGT
CAAAAGCAGA AGGTTGCAAT TGCTGCTATT CTTGCGCTAA AGCCTAAAGT TATGGTGTTA
GATGAGCCGA CGTGCGCTTT AGATCCTGTT TCTTCTAAAA TGATTTTTTC GATTCTTAAA
GATTTGAATA AGAATTTTGG AATAACGGTT GTTGTAATTG AGCAAAAAGT TGCGCTTTTA
AGCGAGTATT GCAAGCGTTT AGTTGTGCTT TCTAATGGCA TTTTGTCGCT TGATTTGCCT
GTTAGCCAAG CGTTGAAAAA TATGGATTTG CTTTATTCTA TTGGAATAAA TTATCCGCGT
ACTACGCATT TGGTTAATGA TTTACAGCGT GAGAATATTT GCTCTAAAAG CGATTTGCCT
GTGTCTGTAG AAGATACAGT AAATACTATT GTTAATACGA TTAATAGTGA AAAATCTTTG
ACTTCACATG TTGATTCACA TAGTGAATTT GATAATCGTG AATGCGATTC AAATAAATCG
GCGCTTGCTT GCGACTTTTC ACACGAATCG CAAGTCTCTA CACAATCTTA CGCACAAAAT
AAATCGAAAA ACGATTCACC ATGTCTTTCG CTTAAAAACG TCAGTTTTTT GTATCAAAGT
GGCGTTAGTG CGCTAAAAAA CGTGTCTTTT GAAGCTTACG CTGGAGAGCT CGTAACTCTT
GTTGGTAGAA ATGGTGCTGG CAAAACAACT ATTACCAAAA TTATTAATGG TTTATTAAAA
CCAACAGAAG GCAACGTAAC AATTGATGGC GTTGACACTA AGTCTCTTCG TATTAGTCAA
ATAGCAAAAT ATGTATCTAC CTTATTCCAA AATCCTGACC GACAATTGTG CAAAGAAACG
GTACTTGAAG AAGTTACTTT AAGCTGTATT TTGATTGGTC AGAATGAGGA CGAAGCTAAA
GCTCACGCAA TGGAAATTAT TGATGAGTTG GAGCTGGATT CTGAAGCTAG CCCGTTTATG
CTCTCTCGTG GCCAGCGTCA AATGGTTGCT TTAGCTGCGA CAGTTGTAAC AAATCCTAAG
ATTCTTCTTC TTGACGAGCC AACTTGCGGT CTTGATTACA AGGAATGCAT GAGAATTATG
CAAGTTGTAG AGCGTTTAAG AAAAAACGGT TGCTGCGTGA TTATGGTTTG TCACGATATG
GAAGTTGTGC TTGATTATGC AACTCGACTT ATAACAATTA ATGATGGAAA GCTTATTATT
GATGGTTCAG CGTACGATGT GTTTGAAAAA CCGGAAGTGT GCTCTGCTGC AGCATTGTAT
CCACCATTAT TGTGTTCCGT TTCTCAAGGC TTGGTTGCGC ATGGATTTAA TAAGTGCAAT
GGCTTGTATG TGCGCGAAGA ATTAGTAGAA GCGTTGCGCG GCGAAAAAAT CACAAAACAG
ACTGTACAGA ATCAGCAGAA TTAA
 
Protein sequence
MPLLELKDVS FKYVNRNKDD SLDSSKAQDS TFALKDVSLS VESGEFVGII GPSGSGKTTL 
ASLFSGAIPH HYSGELLGSV KIAGQDTNNL ALTNIACLVG SVIQDIDAQM VAANVEDEIL
FGLENFGVAH SEIPSRIDEA LQIVGISDLR NRDLDTLSGG QKQKVAIAAI LALKPKVMVL
DEPTCALDPV SSKMIFSILK DLNKNFGITV VVIEQKVALL SEYCKRLVVL SNGILSLDLP
VSQALKNMDL LYSIGINYPR TTHLVNDLQR ENICSKSDLP VSVEDTVNTI VNTINSEKSL
TSHVDSHSEF DNRECDSNKS ALACDFSHES QVSTQSYAQN KSKNDSPCLS LKNVSFLYQS
GVSALKNVSF EAYAGELVTL VGRNGAGKTT ITKIINGLLK PTEGNVTIDG VDTKSLRISQ
IAKYVSTLFQ NPDRQLCKET VLEEVTLSCI LIGQNEDEAK AHAMEIIDEL ELDSEASPFM
LSRGQRQMVA LAATVVTNPK ILLLDEPTCG LDYKECMRIM QVVERLRKNG CCVIMVCHDM
EVVLDYATRL ITINDGKLII DGSAYDVFEK PEVCSAAALY PPLLCSVSQG LVAHGFNKCN
GLYVREELVE ALRGEKITKQ TVQNQQN