Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0613 |
Symbol | |
ID | 8709437 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 677118 |
End bp | 679001 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 646482722 |
Product | cobalt ABC transporter, ATP-binding protein |
Protein accession | YP_003373848 |
Protein GI | 283783094 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR01166] cobalt transport protein ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCTTTGC TTGAGTTAAA AGATGTGTCT TTTAAGTATG TGAATCGGAA TAAAGATGAT TCTTTAGACT CTTCAAAGGC ACAAGATTCC ACTTTTGCAC TAAAAGATGT AAGTCTTAGC GTAGAATCTG GCGAATTTGT GGGAATTATT GGTCCTTCTG GCTCTGGAAA AACAACTCTT GCTTCGCTTT TTTCTGGCGC GATTCCGCAT CATTATTCTG GCGAACTTTT AGGAAGCGTT AAGATTGCGG GTCAAGACAC TAACAATCTT GCTTTAACTA ACATTGCTTG CTTGGTTGGA TCTGTTATTC AAGATATTGA TGCGCAAATG GTTGCCGCAA ATGTTGAAGA TGAGATTCTT TTTGGCTTAG AAAATTTTGG CGTTGCGCAT AGCGAAATAC CAAGTCGAAT AGATGAAGCT TTGCAAATTG TTGGCATTAG TGATTTGCGT AACCGTGATT TAGACACTTT GTCTGGAGGT CAAAAGCAGA AGGTTGCAAT TGCTGCTATT CTTGCGCTAA AGCCTAAAGT TATGGTGTTA GATGAGCCGA CGTGCGCTTT AGATCCTGTT TCTTCTAAAA TGATTTTTTC GATTCTTAAA GATTTGAATA AGAATTTTGG AATAACGGTT GTTGTAATTG AGCAAAAAGT TGCGCTTTTA AGCGAGTATT GCAAGCGTTT AGTTGTGCTT TCTAATGGCA TTTTGTCGCT TGATTTGCCT GTTAGCCAAG CGTTGAAAAA TATGGATTTG CTTTATTCTA TTGGAATAAA TTATCCGCGT ACTACGCATT TGGTTAATGA TTTACAGCGT GAGAATATTT GCTCTAAAAG CGATTTGCCT GTGTCTGTAG AAGATACAGT AAATACTATT GTTAATACGA TTAATAGTGA AAAATCTTTG ACTTCACATG TTGATTCACA TAGTGAATTT GATAATCGTG AATGCGATTC AAATAAATCG GCGCTTGCTT GCGACTTTTC ACACGAATCG CAAGTCTCTA CACAATCTTA CGCACAAAAT AAATCGAAAA ACGATTCACC ATGTCTTTCG CTTAAAAACG TCAGTTTTTT GTATCAAAGT GGCGTTAGTG CGCTAAAAAA CGTGTCTTTT GAAGCTTACG CTGGAGAGCT CGTAACTCTT GTTGGTAGAA ATGGTGCTGG CAAAACAACT ATTACCAAAA TTATTAATGG TTTATTAAAA CCAACAGAAG GCAACGTAAC AATTGATGGC GTTGACACTA AGTCTCTTCG TATTAGTCAA ATAGCAAAAT ATGTATCTAC CTTATTCCAA AATCCTGACC GACAATTGTG CAAAGAAACG GTACTTGAAG AAGTTACTTT AAGCTGTATT TTGATTGGTC AGAATGAGGA CGAAGCTAAA GCTCACGCAA TGGAAATTAT TGATGAGTTG GAGCTGGATT CTGAAGCTAG CCCGTTTATG CTCTCTCGTG GCCAGCGTCA AATGGTTGCT TTAGCTGCGA CAGTTGTAAC AAATCCTAAG ATTCTTCTTC TTGACGAGCC AACTTGCGGT CTTGATTACA AGGAATGCAT GAGAATTATG CAAGTTGTAG AGCGTTTAAG AAAAAACGGT TGCTGCGTGA TTATGGTTTG TCACGATATG GAAGTTGTGC TTGATTATGC AACTCGACTT ATAACAATTA ATGATGGAAA GCTTATTATT GATGGTTCAG CGTACGATGT GTTTGAAAAA CCGGAAGTGT GCTCTGCTGC AGCATTGTAT CCACCATTAT TGTGTTCCGT TTCTCAAGGC TTGGTTGCGC ATGGATTTAA TAAGTGCAAT GGCTTGTATG TGCGCGAAGA ATTAGTAGAA GCGTTGCGCG GCGAAAAAAT CACAAAACAG ACTGTACAGA ATCAGCAGAA TTAA
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Protein sequence | MPLLELKDVS FKYVNRNKDD SLDSSKAQDS TFALKDVSLS VESGEFVGII GPSGSGKTTL ASLFSGAIPH HYSGELLGSV KIAGQDTNNL ALTNIACLVG SVIQDIDAQM VAANVEDEIL FGLENFGVAH SEIPSRIDEA LQIVGISDLR NRDLDTLSGG QKQKVAIAAI LALKPKVMVL DEPTCALDPV SSKMIFSILK DLNKNFGITV VVIEQKVALL SEYCKRLVVL SNGILSLDLP VSQALKNMDL LYSIGINYPR TTHLVNDLQR ENICSKSDLP VSVEDTVNTI VNTINSEKSL TSHVDSHSEF DNRECDSNKS ALACDFSHES QVSTQSYAQN KSKNDSPCLS LKNVSFLYQS GVSALKNVSF EAYAGELVTL VGRNGAGKTT ITKIINGLLK PTEGNVTIDG VDTKSLRISQ IAKYVSTLFQ NPDRQLCKET VLEEVTLSCI LIGQNEDEAK AHAMEIIDEL ELDSEASPFM LSRGQRQMVA LAATVVTNPK ILLLDEPTCG LDYKECMRIM QVVERLRKNG CCVIMVCHDM EVVLDYATRL ITINDGKLII DGSAYDVFEK PEVCSAAALY PPLLCSVSQG LVAHGFNKCN GLYVREELVE ALRGEKITKQ TVQNQQN
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