Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0594 |
Symbol | |
ID | 8709842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 651749 |
End bp | 652924 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 646482704 |
Product | sensor histidine kinase/response regulator |
Protein accession | YP_003373831 |
Protein GI | 283783077 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTATTAG AAAATAAAAT AGATAATGCT AATTCTGAGC AATATAAAAA TACTAAACAA CGTAATTTAT TAAATAAAAA CTCAAATGCT CAACTTAAAA ATAAGTCAAA AATGCGATTT ACGAATTCTT CTGTAAAGCA TAATTATCCA AATCGACCTG TCGGATTTTT TTCATCTCTA AAAATTGAAC TTTCGGCAAT TATTGTTTTT GCAACAGCAA TTGCTTTCGT AATGGCATGG TTTTTACTTA AAACTGGTCT AAATGGCTGG ATTGCAATGC CATTAACACT TATTGTTGCT CTGGGAATTA CATACATTTT TTCTAGAGGA CTTACAGCAC CACTTCGTCA AATGAAAAAT GCTGCAGAAG CTATGGCTGA CGGCGACTAT TCTGTGCGAG TTGCTGTAGA AAATCGTCGT GACGAAGTAG GTAAATTAAC TCTTGCATTT AATGAAATGG CAGAAGAACT TGAACATGCA GATCAAATGC GTAGAGAGCT TATAGCAAAC GTAAGTCACG AACTGCGCAC TCCTGTTTCT GCTTTACAAG CGATGCTTGA AAATCTTGCA GACGGAGTTG TTGATCCTAC TCCATCTAAT ATGGAAGCTA TATTAAACCA AACTCATAGA CTTGCTGATC TTATTACTTT CCTTCTTGAT TTATCTAGAG TTGAAGCAGG CGCGGAAAGC CTTAATATAA CTTCATTTAA TTTCACAGAC TTTATTGACG AAATTATCGA ACCACTAGAA ATAGCTGATT CAGGTCATAA TCATAATATT GAAGTTCAAA TTAATGATGA GATTGAATTA ACAGGAGATC AAGCTCGCCT TTCGCAACTT TTTACTAATA TTATTTCTAA CGCTCTAAAA CATTCAGACG ATGGAACTCG TGTTCTTATA AGTGCTCATA TTAATCACAG CCAAAACTCT GTAATATGCA ATGTTGTGAA TTTCGGAGAA CAAATTCCTC AAGAAGATCG CGCCGATATT TTCAGAAGAT TTGTTAAAGG AAATCAGCGA ATTGGCACAG AATCAGGAGG AACAGGATTA GGATTATCAA TTGCTCGTTG GGCTGCACAA TTGCACCATG GAACTGTAAA AGTAGTAGAC GATAAACGCG GTCCGAACTT TGAAATTGCG CTTCCGCTAA ACTATAGCAA TACAATAGCA AACTAA
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Protein sequence | MVLENKIDNA NSEQYKNTKQ RNLLNKNSNA QLKNKSKMRF TNSSVKHNYP NRPVGFFSSL KIELSAIIVF ATAIAFVMAW FLLKTGLNGW IAMPLTLIVA LGITYIFSRG LTAPLRQMKN AAEAMADGDY SVRVAVENRR DEVGKLTLAF NEMAEELEHA DQMRRELIAN VSHELRTPVS ALQAMLENLA DGVVDPTPSN MEAILNQTHR LADLITFLLD LSRVEAGAES LNITSFNFTD FIDEIIEPLE IADSGHNHNI EVQINDEIEL TGDQARLSQL FTNIISNALK HSDDGTRVLI SAHINHSQNS VICNVVNFGE QIPQEDRADI FRRFVKGNQR IGTESGGTGL GLSIARWAAQ LHHGTVKVVD DKRGPNFEIA LPLNYSNTIA N
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