| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0589 |
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| Symbol | |
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| ID | 8708767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 642591 |
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| End bp | 644087 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482698 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_003373825 |
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| Protein GI | 283783071 |
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| COG category | [K] Transcription |
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| COG ID | [COG1316] Transcriptional regulator |
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| TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.581304 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAAAG AAATGATATT GCCACAACCT AAAAGGTTAC TCATTATTGA GAAAGAAGGT
ACGATGACAA CTTCACGGTA TCCTGAAGGC ATGCGGTACC AACCAGGCGA AGATTGGAAC
TCAACTCCTC ATCATAGTCT TGGTTATAGA ATGATTAACC GCACGCGCAA GATACTGTGC
ATGTTTGTTA TTTCAGTACT TACATTCTTT TCAACAATCA TAGCTGCAGT GTGGTTAGAT
TTTTCTTCTG CTGTAAGTAA CAGAGTCATA AACGTTATAT CTAAAGATCC AGAAGCTAAT
CAAACACTTG ATATTAACGC AGGCAAACCA GTAACTTTTC TTGTTTTAGG TCAAGATTCT
CGAGATGGGA ATAATCAGAG CTTTACACAT GACGGCGAAA CTGGTGATCA TCAGTCAGAT
ACTACTATGG TAGTTCAAAT TAGCGCAGAT AGATCATACA TGAATATCGT TTCTATTCCA
CGAGATTCTA TGGTAAACGC ACCAGCATGC GACACTACAA AAGGACATAT TCCTGCAAGA
AAACATGTGA TGTTTAATTC AATTTTCGCC TTAGGATATG CGCAAGGTGG AGATTTAGCT
TCAGCAGCAT CATGCTCGTT AAAAGCTGTT AATTCACTTA CCGGTTTAAA TATTCATCAT
TTTATAGTCG CTGATTTCAG TGGATTAAGC AATATGATTG ATGCAGTTGG TGGAGTATCT
GTGTGCATCC CAACAGCAAC TCGCGATGCC TATACGGGCG TGAATTTCAA ACAAGGAATG
CAGCATCTTA ATGGTCGACT TGCTACTCAA TACGCTAGAA TGCGCCACGA TACAGCAAGC
GATGGCTCTG ACATAATGCG AACAACAAGA CAGCAATACT TGATTAAACA GCTTTTACAT
CAAGCACTAT CTAAAAACTT ATTTACTCAG ACAAGTGAGC TTTACCAGCT TGCAAAAGCA
TCGTTGGGAG CATTGAATAT AAGTGAAGGC TTGGCCAATC CTACCACTTT GGTCGGTTTG
GCATTAAGCA TGCGTAAATT AGATTCTTCA CATATTTATG CTCGTACTAC TCCTGTTATT
CCAGATCCTT ATGATCCAAA TCGTGTTGTG TGGTCTGATG AAGCAAACAA TATTTGGGAT
TTGATGCGTG AAAATAAACC GCTATCGCTA AATCATAAAA CTAACGGCAC TAACAAAAAG
AATGCCAATA ATTCGTCTAA GAATACGAAT AATCAAGACA ATGAAGATAC GGATGACGAT
AACAATATAA ACGAAAACGA CAAGCTTAAT AAAACTACAG ATCCAAAGAA GATGGGACGT
GTTGATCCAA AAACAGGATT AATAAAAAAT TCTCAAGGAC AACTTATTGA TCCAAATACT
GGAGGAATTG TAAATCCTGA AAATGGAACT ATTCACAATC CACAAACAGG ACAATACGTT
GGCTTTGCAG ACAAGTATGC AAACAATGTA CTTTGCGCTG TGCCTAGAAA AAAATAA
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| Protein sequence | MTKEMILPQP KRLLIIEKEG TMTTSRYPEG MRYQPGEDWN STPHHSLGYR MINRTRKILC
MFVISVLTFF STIIAAVWLD FSSAVSNRVI NVISKDPEAN QTLDINAGKP VTFLVLGQDS
RDGNNQSFTH DGETGDHQSD TTMVVQISAD RSYMNIVSIP RDSMVNAPAC DTTKGHIPAR
KHVMFNSIFA LGYAQGGDLA SAASCSLKAV NSLTGLNIHH FIVADFSGLS NMIDAVGGVS
VCIPTATRDA YTGVNFKQGM QHLNGRLATQ YARMRHDTAS DGSDIMRTTR QQYLIKQLLH
QALSKNLFTQ TSELYQLAKA SLGALNISEG LANPTTLVGL ALSMRKLDSS HIYARTTPVI
PDPYDPNRVV WSDEANNIWD LMRENKPLSL NHKTNGTNKK NANNSSKNTN NQDNEDTDDD
NNINENDKLN KTTDPKKMGR VDPKTGLIKN SQGQLIDPNT GGIVNPENGT IHNPQTGQYV
GFADKYANNV LCAVPRKK
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