| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0588 |
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| Symbol | |
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| ID | 8709657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 641188 |
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| End bp | 642486 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482697 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_003373824 |
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| Protein GI | 283783070 |
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| COG category | [K] Transcription |
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| COG ID | [COG1316] Transcriptional regulator |
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| TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.952975 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCGA GATTGTATGA GGACCCTTCT GAAGATAATA TAAACCCACC TATCTTCACT
CCTTCTCATA ATAACGATTC ATCTAACTCA AACGTGCCTC CTAGTTTCAC TCCAAAACGC
GTAAAAAGAG GCAAAATAGA GTCTAATGCG CTTCCATCAC AAGCGCCTTC TTTTGCGCCT
ACAACTCAAA GAACAAGAAT CTTAAAAAGT CCAGAACAAT GTTCTTCTAG ACCTGTTTCT
TACACATCGC AATTGCAACC AAGACCAGCA CCGCGCACAA GTTCTATTTC ACAAATGCGT
ATTCCAACAA CTATAAATAA AGCAGTTGGA AGTACAGCAA AAATACTACC GCACAAACCG
CACAGAATTT TACATGCATT TATTGCATTT TTTGTTGTTC TGGCAATAGG TGTAACTGGT
TTTGGGGTAT ATTCATGGAA CTGGGTTGAC TCAAGAATTA ACCGCACTAC TTGGCTTACT
AGTACTCCTA GCACTCAAGG CAAAGCATGG CTTATTCTTG GCTCTGATCA ACGAGAAGGC
GAAGAAGCTA AAGAGATAAC AGGATTTAGA ACAGATACTA TTCTTGTATT GACAAAGCCG
AGCAATGGTC ACAGCTCTCT AATTTCTATT CCTCGAGATT CTCTTGTTTC TTTAAATGGC
GAACAAGTAA AAATTAATAG CGTTGCGCAA GCAGCTGGGA ATAAAGCATT AACAGCAGCA
ATAGAAAAAA TTACAGGTCA TCGCATTGAC CATGTTGCAG AAATACGTTT TGGCGGTCTT
ACTAATGTTG TTAACGCTAT AGATGGCATT GATTTATGCT ACAACCGTAC AGTAAGCGAT
AAGTTTAGCG GGTTAAATTG GACTTCTGGA TGCCATCACG TTGATGGGAA TACAGCGTTA
GCATTTTCGC GAATGCGATA CGCAGATCCA GAATCTGATT TTGGACGAGC TGCACGCCAA
CGAATGGTTA TTGCAGCTAT TATGAAAAAA GCTTTAGATC ACAATACCTT ATTGAATTTT
GGAAAAGTAA AAAAGCTTGC TGAAACGGGA CTTGCTTCAG TTATTTTTGA TGAGAAAACC
AATCCAGGAA CATTATGGGA AATGGCTCAA GCATTCAAAG AAGCAACTGG ACCGTCAGGC
ATATCTGGAA CAGTATATTG GACGAATCCT GACTATCAAG TTCCAGGAGT TGGTTCATCT
GTGCTTCTCG ATGATGCTAA AAACTTAGAT TTATTCAACC AACTTGCATC AGGAACTCAT
AAACCTGGAT CAGTTGGAAC TCTTGCAGAG CAACAATAA
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| Protein sequence | MNSRLYEDPS EDNINPPIFT PSHNNDSSNS NVPPSFTPKR VKRGKIESNA LPSQAPSFAP
TTQRTRILKS PEQCSSRPVS YTSQLQPRPA PRTSSISQMR IPTTINKAVG STAKILPHKP
HRILHAFIAF FVVLAIGVTG FGVYSWNWVD SRINRTTWLT STPSTQGKAW LILGSDQREG
EEAKEITGFR TDTILVLTKP SNGHSSLISI PRDSLVSLNG EQVKINSVAQ AAGNKALTAA
IEKITGHRID HVAEIRFGGL TNVVNAIDGI DLCYNRTVSD KFSGLNWTSG CHHVDGNTAL
AFSRMRYADP ESDFGRAARQ RMVIAAIMKK ALDHNTLLNF GKVKKLAETG LASVIFDEKT
NPGTLWEMAQ AFKEATGPSG ISGTVYWTNP DYQVPGVGSS VLLDDAKNLD LFNQLASGTH
KPGSVGTLAE QQ
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