Gene HMPREF0424_0511 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0511 
Symbol 
ID8709014 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp555423 
End bp556055 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content39% 
IMG OID646482625 
ProductDNA-binding protein 
Protein accessionYP_003373752 
Protein GI283782998 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.00239636 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTGTTGG GAGAAAAAAT CAGAAATGCG CGCGTGGAAG CGGGTTTAAC TCAGGAAGAA 
CTTGCTGAAA TGATTATGGT TTCGCGTGCT GCGGTAGCGA AGTGGGAAGG TGGTCGCGGT 
CTGCCGGATG TTGCAAATTT GAAGGTGATT GCGGATGCGC TGGGTGTTAC TGTCGACCAT 
TTGTTGGATA AAGACAATGC TATTGATTTG TCAATCATTA AGAAGCCTAT TGATTTAGCG 
AAGTATGGTC TTAATGAAAA ATTGAGTGTT CGTAAGAAAA TCAAGATGAA GGAACAAATT 
ATTCGTGATG AATATGCAGA CGCTGAAATT ATTATGCTCA CGGTGACGAA GTTTATTCCA 
AATTCGTCTG AAAAGTTTAT GGATAATTTT ATCGGGTGTA TTACTACTTT GTTCGGTGAT 
ATTCCTTTGT TTGATACGTT TGCATTCGGT AAAGCGGTAG AGAGTATTGG CAGTGAACAG 
TATTACTTGG TGAATAAAAA AGAAAAGCAA TTTTTTGTGC TGATAACGGA TGAGTATATT 
ATTAGCAGAA TGATGCGAGT AAAGTTCACT GATAAGAAGA TGTGTGTTGG GGATAAGGAA 
TTTACGCAAG TTGGTAAGTT GCGTGATAAG TAA
 
Protein sequence
MLLGEKIRNA RVEAGLTQEE LAEMIMVSRA AVAKWEGGRG LPDVANLKVI ADALGVTVDH 
LLDKDNAIDL SIIKKPIDLA KYGLNEKLSV RKKIKMKEQI IRDEYADAEI IMLTVTKFIP 
NSSEKFMDNF IGCITTLFGD IPLFDTFAFG KAVESIGSEQ YYLVNKKEKQ FFVLITDEYI 
ISRMMRVKFT DKKMCVGDKE FTQVGKLRDK