Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0509 |
Symbol | |
ID | 8709723 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 552238 |
End bp | 552972 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 646482623 |
Product | putative transposase InsK for insertion sequence IS150 |
Protein accession | YP_003373750 |
Protein GI | 283782996 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0218144 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGAACTA AAGGTATTAA AGTATCTGAA AAAGTAGTAA GACGGCTCAT GAAAGAAGAG TTAATTGAGG TTAGATATGC CAGGCGTAAA AGACGCTATT CAAGTTACAT AGGAGAAATT ACTCCCGCAT GTAGTAACAT CGTTAATAAT AATTTTCATG CAGATTCACC TAATAAGATT TGGCTTACAG ACATTACTGA GTTTTCAGCA AAAGAGTCAA AACTCTATTT AAGCCCTATG ATTGACTGTT TTGATAGTAA AGTGGCCTCT TACGCTCTTT CAAACCACCC AGATCAGTGT CTTGTAGATG AAATGTTAGA AGGGGCTTTA ACTACCCTTG ACACTACAGA ATGTAAAAGC TTAGTTATTC ATACAGATAG AGGAGGTCAC TATAGAGATG GCAGGTGGAT TGAGAGATTA GAAGGTCTTG GTATTACACG CTCCATGTTA AGAAAAGGAA ACAGTGGAGA TAATGCTGCC TGTGAAGGCT TTTTTGGACA AATGAAAACA GAAATGTATT ATCCACTTAA CTGGGATAGT ACAGAAGAAT TACGTCAAGC TATTCATACT TATATTGATT TTTACAACAA TCACAGAATT AAAATGGGGA TTAAAAGACA ATTATGGAAC ATCGTGCTAT GGTTGCACAA AATGTCTAAA AATTGTACTA AGCCCCAAGC GACATTTTTA TGTCGCCAAA ATTGTCGCTT TGTCGCCAAC GGATACAAAA TTTAG
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Protein sequence | MRTKGIKVSE KVVRRLMKEE LIEVRYARRK RRYSSYIGEI TPACSNIVNN NFHADSPNKI WLTDITEFSA KESKLYLSPM IDCFDSKVAS YALSNHPDQC LVDEMLEGAL TTLDTTECKS LVIHTDRGGH YRDGRWIERL EGLGITRSML RKGNSGDNAA CEGFFGQMKT EMYYPLNWDS TEELRQAIHT YIDFYNNHRI KMGIKRQLWN IVLWLHKMSK NCTKPQATFL CRQNCRFVAN GYKI
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