Gene HMPREF0424_0509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0509 
Symbol 
ID8709723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp552238 
End bp552972 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content36% 
IMG OID646482623 
Productputative transposase InsK for insertion sequence IS150 
Protein accessionYP_003373750 
Protein GI283782996 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0218144 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGAACTA AAGGTATTAA AGTATCTGAA AAAGTAGTAA GACGGCTCAT GAAAGAAGAG 
TTAATTGAGG TTAGATATGC CAGGCGTAAA AGACGCTATT CAAGTTACAT AGGAGAAATT
ACTCCCGCAT GTAGTAACAT CGTTAATAAT AATTTTCATG CAGATTCACC TAATAAGATT
TGGCTTACAG ACATTACTGA GTTTTCAGCA AAAGAGTCAA AACTCTATTT AAGCCCTATG
ATTGACTGTT TTGATAGTAA AGTGGCCTCT TACGCTCTTT CAAACCACCC AGATCAGTGT
CTTGTAGATG AAATGTTAGA AGGGGCTTTA ACTACCCTTG ACACTACAGA ATGTAAAAGC
TTAGTTATTC ATACAGATAG AGGAGGTCAC TATAGAGATG GCAGGTGGAT TGAGAGATTA
GAAGGTCTTG GTATTACACG CTCCATGTTA AGAAAAGGAA ACAGTGGAGA TAATGCTGCC
TGTGAAGGCT TTTTTGGACA AATGAAAACA GAAATGTATT ATCCACTTAA CTGGGATAGT
ACAGAAGAAT TACGTCAAGC TATTCATACT TATATTGATT TTTACAACAA TCACAGAATT
AAAATGGGGA TTAAAAGACA ATTATGGAAC ATCGTGCTAT GGTTGCACAA AATGTCTAAA
AATTGTACTA AGCCCCAAGC GACATTTTTA TGTCGCCAAA ATTGTCGCTT TGTCGCCAAC
GGATACAAAA TTTAG
 
Protein sequence
MRTKGIKVSE KVVRRLMKEE LIEVRYARRK RRYSSYIGEI TPACSNIVNN NFHADSPNKI 
WLTDITEFSA KESKLYLSPM IDCFDSKVAS YALSNHPDQC LVDEMLEGAL TTLDTTECKS
LVIHTDRGGH YRDGRWIERL EGLGITRSML RKGNSGDNAA CEGFFGQMKT EMYYPLNWDS
TEELRQAIHT YIDFYNNHRI KMGIKRQLWN IVLWLHKMSK NCTKPQATFL CRQNCRFVAN
GYKI