| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0426 |
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| Symbol | |
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| ID | 8709117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 465590 |
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| End bp | 467326 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482541 |
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| Product | LPXTG-motif cell wall anchor domain protein |
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| Protein accession | YP_003373673 |
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| Protein GI | 283782919 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000209345 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAATT TCACAAAACG ATGCGTCGCC GCATTCGCCT CGCTCGCAAT GGCTGGGACG
CTGTGCGCGG CGGGGGCTGT GACAGTGTCC GGCGTTGCGT GGGCTAGCAA GCCTGCTGTA
AATACTGCAG ATGATAATAC CGGTGATAAT CCATCCCAAG CTGTGCAAAA GGGAGATGCG
CCATGGGCGC TTAATGATAC CGATAAGGCA AAGACTTATT CCCTCACTAT TTTCAAGTGG
CAGGACGAGC TTGATAAGAG CGGCAAGCAG AAGAAGTCAA CTCCTGTTCC TGGTGCTGAA
TTCACTGTAA AAAAGGTGAC GCAAATCGAC GGTAAGGATA TCGATTTAAC CAAGTACGCA
GATTGGGTTA AGGTCGCCAG TAAGATTGAT GGTCTTAATA AAGGCACTGC TACTGGAATA
ACCACTGAAA ACGGTAATGG TACTAAGAAG AATACTTCTG GTACTGATCA AGGCACAAAA
AAGGGTGTTG CGAAGTTCGA TCTTGGAATC GGTCTGTACC AAGTTCAAGA AACAACAGTT
CCAAAGGGCT TCTCCGCTGC CGAATCCAAG CCATTCTATA TGACAATCCC AAGGATTGAA
AAGGGTTCTG ATGGCAACGT AGTCTACAAC TATGCTCCAT ACGCGGATCC AAAGAACAAG
GATTTGAGTG AGAGCGTTAA GAAGACTGCG GATACTTCTA AGACTGTTGG TGCTGGCGAT
AAGATTTCCT ACACCATTAG CGCTGAGCTT GACAAGATGA AGGAGAAGGC TGAAGGCACT
GAAACTACTG CTAATCTTTC AGCCGATGAT TTTAACGGCT ATTCTGTAGT CGATCTCGCT
CCTGATAAGG CTTTTGTTTA TCCTACTGAC ATTACTAGCG TAGTTACAAA GGTACAACTT
GGAACTGGCG ATGCGCCTGC AACTAGCGAT ACGACGCTTC CTACTGCTGA CTACACCGTT
GCTAAAGCTA AAGATCAAAT TGCTGCTACA ACCACTGACG TTGCTCGCGA TAAGATTATT
ATCTCATTCA CTAAAACCGG TAGGGATGCG CTTGCTACAG CTGCAAACAA CAATGCTGGC
AATGTAGTAA AGGTGTTTGT TACTTTAGAG TTCACTCTTG CTGGTTCGGA TGTTCTTGGC
AACAACACCG TTATTAACAA GGGTGGCTTA ATTCCTTCGC ATGAAAAGGG TAATCCAGAC
GTTGTTACTG GTAAAAAGTA CAAGGAAGTG AAGTTCTCGA AGTTCAAGAT TAAGAAGGTT
TCTTCTACAG ATCAAAGTGC TCTTGAGGGT GGAAAGTTTG TGATATTTGC TAATAAAACC
GATGCACAAG CTTGCGTTAC AGAGCTTAAT AAAGCCAATG GTGATGTAGC CAATAAGTGT
GGTGAGAAAA GTCCTCGCTC AGCTTTTGGA GAAAAAGCAT CAGCAAAAGG TACTGGTTTG
ACCGAAGAAT ATTCTGTAAA GCGTGATGAA GATTTCTACA TCGTAGAAAC TGCTGCTCCA
GCTGGATATA TTCGCAATCC TGATGTTGTT ACAACTAAGG CAACTGACGG TGATGTAACA
TATAAATTCC AGAATCTTCC TACTAAGGAT AAAGGTTTCT GGTTCAACCT TCCAAAGACC
GGTGCTGCTG GCGTAATCAT CTTCGCAGTT ATCGGCATGT GCTTCGTTGG TTCCGGATTC
TTTGTGTACA TGCGTCGTCG CAAGAAGGAA GAGGAGCAGG CTAAGCTCCG CGCTTAG
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| Protein sequence | MNNFTKRCVA AFASLAMAGT LCAAGAVTVS GVAWASKPAV NTADDNTGDN PSQAVQKGDA
PWALNDTDKA KTYSLTIFKW QDELDKSGKQ KKSTPVPGAE FTVKKVTQID GKDIDLTKYA
DWVKVASKID GLNKGTATGI TTENGNGTKK NTSGTDQGTK KGVAKFDLGI GLYQVQETTV
PKGFSAAESK PFYMTIPRIE KGSDGNVVYN YAPYADPKNK DLSESVKKTA DTSKTVGAGD
KISYTISAEL DKMKEKAEGT ETTANLSADD FNGYSVVDLA PDKAFVYPTD ITSVVTKVQL
GTGDAPATSD TTLPTADYTV AKAKDQIAAT TTDVARDKII ISFTKTGRDA LATAANNNAG
NVVKVFVTLE FTLAGSDVLG NNTVINKGGL IPSHEKGNPD VVTGKKYKEV KFSKFKIKKV
SSTDQSALEG GKFVIFANKT DAQACVTELN KANGDVANKC GEKSPRSAFG EKASAKGTGL
TEEYSVKRDE DFYIVETAAP AGYIRNPDVV TTKATDGDVT YKFQNLPTKD KGFWFNLPKT
GAAGVIIFAV IGMCFVGSGF FVYMRRRKKE EEQAKLRA
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