Gene HMPREF0424_0388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0388 
Symbol 
ID8709363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp418161 
End bp418634 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content48% 
IMG OID646482504 
Producthypothetical protein 
Protein accessionYP_003373638 
Protein GI283782884 
COG category[R] General function prediction only 
COG ID[COG2151] Predicted metal-sulfur cluster biosynthetic enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.793437 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGAAA ATCAATCGGC ATCTGAGGTG ATGTATGAAA CGCATCCTGC GAATTTAAGC 
GCGAATGACA TTGGCCGAGT TACAGAAGAT GATATTTTAG ACGCTTTACA CGATGTTGTG 
GATCCTGAGC TTGGCATTGA CGTGGTTGAT TTAGGCTTGG TTTATGGTAT TGAAATTGAT 
GAGCTTGGGC GCGCAATTAT TACTATGACG CTTACCACGC CTGCATGTCC GTTAACTGAA 
TTGATTGAGG ATGAGTGTGC GAATGCGCTC GCAGGCTTGG TGGAAGAGTT TCGTATTGAT 
TGGACGTGGA AGCCGCGTTG GAGCGTTGAA AACATTAATG AGGACGGTCG CGCGCAGCTT 
GAGGCGCTTG GCTACAATCT CAACAGTTTG CAAGCGAATT TTGCTGCAGG AATGTACGGT 
TCTGGCGTAG TTGGCGATGC GTCGATGAGT GCTGGTATTC CGCCAACTGT GTGA
 
Protein sequence
MAENQSASEV MYETHPANLS ANDIGRVTED DILDALHDVV DPELGIDVVD LGLVYGIEID 
ELGRAIITMT LTTPACPLTE LIEDECANAL AGLVEEFRID WTWKPRWSVE NINEDGRAQL 
EALGYNLNSL QANFAAGMYG SGVVGDASMS AGIPPTV