| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0340 |
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| Symbol | |
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| ID | 8708875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 367790 |
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| End bp | 368476 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646482457 |
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| Product | Ham1 family protein |
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| Protein accession | YP_003373594 |
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| Protein GI | 283782840 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0127] Xanthosine triphosphate pyrophosphatase |
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| TIGRFAM ID | [TIGR00042] non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCTTA TTGTGGCAAC ACATAATGAG GGAAAACTCG TTGAAATCAA GCAAATTTTA
GAGGAGCAAT TGTCGAAACT TGCAGACAGT TTCGAGTTAG TAACTGCAGG TTCTCTTGGC
TTGCCTGATC CTGTGGAAAC TGGCGTGACT TTTGAACAGA ATGCTTTGCT CAAAGCGCGT
GATGTTGCTG CAAGAACAGG TTATCCCGCT ATTGCAGACG ATTCGGGTCT TATCGTTGAT
GTGCTTGGTG CTGCCCCTGG TATTCTTTCT GCTAGGTGGA GTGGTGTGCA TGGAGATGAT
AAAGCTAATA ATGAGCTTCT TTTGCGCCAA CTTTCTGATA TCCCAGATCA ATGTCGTACT
GCTCGTTTTC GTTGTGCTGC AGCTCTTGCT ATTCCGGATG GGTGCAGTGA GGTTCCTGAA
GGCAGTGTTA TGTCGCATTC TCACGGCTTT GAGACTGTTC GAGTCGGAGA AATGGTTGGT
CACTTGTTGC GCGAGGCGCA CGGAATTAAT GGTTTCGGCT ATGATCCGCT ATTTGTGCCA
GATTTTCAGC CTATTCGCGA TGGTGTGCAA ATGAAAGGTT TGACTAGTGC AGAGCTGACT
CAAGAAGAAA AGAATGCTAT TTCGCACAGA GGTAATGCTT TGCGCGCACT TTTGCCGGAG
TTGCAGGCAT TATTTATTAC TGAATAA
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| Protein sequence | MKLIVATHNE GKLVEIKQIL EEQLSKLADS FELVTAGSLG LPDPVETGVT FEQNALLKAR
DVAARTGYPA IADDSGLIVD VLGAAPGILS ARWSGVHGDD KANNELLLRQ LSDIPDQCRT
ARFRCAAALA IPDGCSEVPE GSVMSHSHGF ETVRVGEMVG HLLREAHGIN GFGYDPLFVP
DFQPIRDGVQ MKGLTSAELT QEEKNAISHR GNALRALLPE LQALFITE
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