Gene HMPREF0424_0334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0334 
Symbol 
ID8709343 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp362861 
End bp363490 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content49% 
IMG OID646482451 
Producthypothetical protein 
Protein accessionYP_003373588 
Protein GI283782834 
COG category[R] General function prediction only 
COG ID[COG1399] Predicted metal-binding, possibly nucleic acid-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTCGC ATCCATCCCA ATCACCATGG GCTGTTCCAG TAGCGCAAAT GGCTGCGCGC 
GCTGGTAGTA GCATGTCGTT GCATCGCGTA TTTCCGGCGC CGGAAGGTAT TGGAGATTAC 
GTTATTGGCG TAAAGCCAGA CAGTGATGTT ATGGTTGATG GCGATTTTGA TGCTGTGGCT 
GACGGCTTAA TGTTTCAGGG CAGTATTACT GCTCCGGTGC ATGCAGAATG TACTCGATGC 
TTGATGCCGC TTCGTCGCGA TTGGAAAGTG GATGTGTGCG TATTCTTTCC ATATGCTGAC 
TCGCGTTCTA ATCGTTCGGA TAATCGCAAT ACTCGTGGCG ATGCGGATGA AGCTGAATCG 
CAAATTTGGG ATGAAAATGA CGAGTCGGGC AATGTGTATC CGCTAGTTGC GGGTGGTGAT 
TTTGCGGATA TTGAGGCTCT TATTCGCGAC ACGATGGTAA GTGAGCTGCC GTTGCAACCG 
TTGTGCGAGC CGGATTGTCG CGGACTTTGC TCTCAGTGTG GCGAAAACTT AAACGAGCAT 
CCAGATCATC ATCATGACGT TACGGATATT CGTTTTGCTG CTTTAGAGGA TTTGAAAGCT 
CAGCTTGAGC AGAATGAAAA GCGGCATTAA
 
Protein sequence
MASHPSQSPW AVPVAQMAAR AGSSMSLHRV FPAPEGIGDY VIGVKPDSDV MVDGDFDAVA 
DGLMFQGSIT APVHAECTRC LMPLRRDWKV DVCVFFPYAD SRSNRSDNRN TRGDADEAES 
QIWDENDESG NVYPLVAGGD FADIEALIRD TMVSELPLQP LCEPDCRGLC SQCGENLNEH 
PDHHHDVTDI RFAALEDLKA QLEQNEKRH