| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0328 |
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| Symbol | ffh |
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| ID | 8709042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 355289 |
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| End bp | 356959 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646482445 |
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| Product | signal recognition particle protein |
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| Protein accession | YP_003373582 |
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| Protein GI | 283782828 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0541] Signal recognition particle GTPase |
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| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.59605 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCAT TTAGTTCGTT AACAGACCGC CTTTCCAATG CTTTTAAGCA TTTGCGCAGC
AAAGGCAAGC TATCAGAATC CGATATTGAC GGCACAATTC GCGAAATTCG CCGCGCACTT
CTCGATGCAG ACGTTGCGTT GGAAGTAGTC CGCTCATTCA CTGCTCGAAT TCGCGAGCGC
GCTCTTGGTG AGGAAGTTTC GCACGCTTTA AATCCAGCTC AGCAAGTTGT GAAAATTGTA
AACGACGAGC TTACGCAGGT ATTGGGCGCA GGCGTAGATA GGCAGCTTAA TTTTGCGAAG
TATCCTCCAA CTGTAATTAT GCTTGCAGGT TTGCAAGGTG CGGGTAAAAC TACGCTTGCT
GGAAAGCTAG GCTACTGGCT GAAGGATGCA GGCCATACTC CTTTGCTTGT AGCAGCAGAT
TTGCAACGAC CTAATGCAGT CACGCAGCTG CAAGTTGTTG GCGAGCGCGC AGGAGTTCCT
GTATTTGCTC CAGAAAAGGG CGTACAAACA GGCGGAAGTG CGATTTCTTT GCCATGGTTC
ACTAAAGGCG ACCCGGTTAA GGTTGCGCGC GATTCTATTA ATTATGCGCG CGAAAAAATG
TATGACACTG TGATTATTGA TACCGCAGGT CGTTTGGGTG TTGACGAAGA GCTCATGAAG
CAGGCACGCA ATATTCGCGA TGCCGTGCAA CCGCAAGAAG TGCTGTTTGT TATTGACGCA
ATGATTGGTC AAGATGCTGT TCGCACTGCT CAAGCTTTTA ACGATGGCGT GAACTTTACT
GGCGTTGTGC TTTCTAAACT TGATGGCGAC GCTCGAGGAG GTGCTGCACT TTCGGTTGCA
AGCGTTACTG GAAAACCGAT TTTGTTTGCC TCTACAGGTG AAGGTTTGAA AGATTTTGAA
ATCTTCCATC CTGATCGAAT GGCTTCACGC ATACTCGATA TGGGCGATAT TTTAACGCTT
ATTGAGCACG CACAGAAGCA GTTCGACGAA GAAGAATCAC GCAAGGCTGC TGCAAAAATA
GCTGAAGGCA GCTTTGGTTT GGATGATTTT TTGGAGCAAC TTCAGCAAGT TCGTAAGCTT
GGCTCAATGA AGAAGCTTTT GGGCATGATG CCTGGAATGG CAGCTCACCG TCAAGAGCTT
GAGCAGTTTG ACGATAAGGA AATTGACCGA ACTGAGGCAA TTATTCGCTC TATGACTCCT
CAAGAGCGTA GAAATACAAA GATTATTGAC GGATCTCGCC GCGCGAGAAT TGCTGCTGGC
TCAGGTGTGA GCGTTTCGCA AGTTAATGCA CTTTTGCAAC GTTTCGAACA GGCTGCAAAA
ATGATGAAGC GAATGAGCGG TGGAGCTGGA ATGCCTGGCA TGGGCGGCAT TCCTGGATTC
GGTGGAGCCG GCAGTAAGTC GAAGCGCAAA GACAAGAAAG GCAAGAAGAA GGGCGGAAAG
TCCGGAAATC CAATGCGCAG GGAAGCTGAA GAGCGCGCGT TGCGTGAGCG TCTTTCTGGC
GAATCTACTA GCGACGATGT TGCAGGTTCT GCTTTTGCAA AGCCGCAACA ACCAAATCTT
CAGAATCTTC CTGAAGGACT TAAGGAACTT ATGAATTCCG AAGATGCAAA TCAAGATAAT
CAACTGCCAC CTAACTTTGG CGGTGGATTA GCTGGCTTAT TCGGTCGATG A
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| Protein sequence | MAAFSSLTDR LSNAFKHLRS KGKLSESDID GTIREIRRAL LDADVALEVV RSFTARIRER
ALGEEVSHAL NPAQQVVKIV NDELTQVLGA GVDRQLNFAK YPPTVIMLAG LQGAGKTTLA
GKLGYWLKDA GHTPLLVAAD LQRPNAVTQL QVVGERAGVP VFAPEKGVQT GGSAISLPWF
TKGDPVKVAR DSINYAREKM YDTVIIDTAG RLGVDEELMK QARNIRDAVQ PQEVLFVIDA
MIGQDAVRTA QAFNDGVNFT GVVLSKLDGD ARGGAALSVA SVTGKPILFA STGEGLKDFE
IFHPDRMASR ILDMGDILTL IEHAQKQFDE EESRKAAAKI AEGSFGLDDF LEQLQQVRKL
GSMKKLLGMM PGMAAHRQEL EQFDDKEIDR TEAIIRSMTP QERRNTKIID GSRRARIAAG
SGVSVSQVNA LLQRFEQAAK MMKRMSGGAG MPGMGGIPGF GGAGSKSKRK DKKGKKKGGK
SGNPMRREAE ERALRERLSG ESTSDDVAGS AFAKPQQPNL QNLPEGLKEL MNSEDANQDN
QLPPNFGGGL AGLFGR
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