| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0309 |
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| Symbol | |
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| ID | 8708818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 336645 |
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| End bp | 337226 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646482426 |
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| Product | single-strand binding family protein |
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| Protein accession | YP_003373563 |
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| Protein GI | 283782809 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0629] Single-stranded DNA-binding protein |
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| TIGRFAM ID | [TIGR00621] single stranded DNA-binding protein (ssb) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0940185 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAGGTG AAACAATTAT TACCGTCGTG GGAAATCTCA CTTCGGATCC TGAATTAAGG
GCACTTTCCA ACGGTGCTTC TGTTGCGAGC TTTACCATTG CATCCACACC TAGAACGTTT
AATCGTAATA CGAATCAGTT CGAGGATGGG CCTGCATTAT TTATGCGTTG CTCAGCGTGG
AGAGACTTGG CAGAACATTG TGCAAACAGC CTTTCTAAAG GCACGCGCGT GATTGCTCAA
GGCAGGTTGT CGCAGCGTTC GTATCAAGCG CAAGACGGCT CGAATCGCAC AGTTGTTGAA
CTTACGGTTG ACGAAATTGG TCCATCTTTG CGTTATGCAA CTGCGCAAGT TAACCGCCAA
AGCTCTTCAA CAGGTTTTGC TGGTGGCTCG CGCGCATCAA ATGCTGCTGG CGCAGGTTAT
GCTGGCGGAG CAAATTATGC TGCTAGCCAG GCTGCTTCTC AGCATGCCGC AAATTCTTCA
GCGGCTGATC CGTGGAGTGC TGCTGCGCCA ACAAACGATA GTTTTTCAAC TTTCGGTGCC
AATTCTGATT TTGGCGGCGA TTCTGAAGAA CCTGAGTTCT AG
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| Protein sequence | MAGETIITVV GNLTSDPELR ALSNGASVAS FTIASTPRTF NRNTNQFEDG PALFMRCSAW
RDLAEHCANS LSKGTRVIAQ GRLSQRSYQA QDGSNRTVVE LTVDEIGPSL RYATAQVNRQ
SSSTGFAGGS RASNAAGAGY AGGANYAASQ AASQHAANSS AADPWSAAAP TNDSFSTFGA
NSDFGGDSEE PEF
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