Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0190 |
Symbol | nth |
ID | 8709027 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 211640 |
End bp | 212314 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 646482309 |
Product | endonuclease III |
Protein accession | YP_003373454 |
Protein GI | 283782700 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0177] Predicted EndoIII-related endonuclease |
TIGRFAM ID | [TIGR01083] endonuclease III |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTATC AAAGTTCTAA TATGCGAGAA TCAAAACAAG CGAAATTAGC TCGTATTTAT GCAGAGTACG ATTTATTGTG CAAAGAAATA CCGGAACCTA AGTGTGCATT AAATTTCAAA AATCCATTTG AGCTACTAAT TGCTACTGTA TTAAGCGCGC AAACTACAGA TAAGCGTGTG AATATCGTGA CGCCTGAACT CTTTTCTATT TTCCCCAACG CGAGTTCTTT AGCTGCTGCT CCTGTATCTC AAGTTGAGTC AATTATTTAC CCTCTCGGAT TTTATAGAGT AAAAGCACAG AACATTATTT CATTATCTGC ATGTTTGCTT AATAATTTTT CTGGTATAGT GCCATCAAAT ATGGAAGCTT TAATATCGTT GCCAGGTGTT GGTCGTAAAA CTGCCAATGT CGTTCTTGGC AACGCATTTG GATTACCGGG GTTTCCTGTA GATACTCACG TAATACGTGT TACAGGTCGT CTTGGTTGGC GTAAGGTTCA GAATCGTCCA AATCCTGTTG CTATTGAGCG CGAAATAACT GCTTATTTTG CTCCTAAAGA GTGGACTAAT CTCTCTCATA GACTTATTTT GCATGGCAGA AAAATTTGCA CTGCTCGGAA TCCAAAATGT GTTTCATGCC CTTTAAATAC AACATGTCCG TCGGCAATTA TTTAA
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Protein sequence | MIYQSSNMRE SKQAKLARIY AEYDLLCKEI PEPKCALNFK NPFELLIATV LSAQTTDKRV NIVTPELFSI FPNASSLAAA PVSQVESIIY PLGFYRVKAQ NIISLSACLL NNFSGIVPSN MEALISLPGV GRKTANVVLG NAFGLPGFPV DTHVIRVTGR LGWRKVQNRP NPVAIEREIT AYFAPKEWTN LSHRLILHGR KICTARNPKC VSCPLNTTCP SAII
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