Gene HMPREF0424_0178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0178 
SymbolnrdI 
ID8709444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp198578 
End bp199078 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content40% 
IMG OID646482297 
ProductNrdI protein 
Protein accessionYP_003373442 
Protein GI283782688 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1780] Protein involved in ribonucleotide reduction 
TIGRFAM ID[TIGR00333] ribonucleoside-diphosphate reductase 2, operon protein nrdI 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGTGAGC AAGAAAATAT AACACAACAA AGCGAACCAG AATCTAGCGC ACAAGGTGAA 
TCAATCGGAG CTGTAGTCTA CTTTTCCTCA GTTTCCGAAA ATACGTTAAG ATTTGTGCAA 
AATTGCGATT TTCCAAGCAA TAACGTGAAC GTATATCGCA TACCGCTTCG TCCTAAAGAA 
CCGGAATTAA ACGTGCGCGA ACCGTATGTT TTGATTGTTC CAACTTACGG CGGTGGAAAT 
ATTGCGAAAG CAATACCGAT GCAAGTTCGC AAATTCTTAA ATAATCGCGA AAATCGTTCG 
TTTATTCGCG GAGTAATTTC TTCCGGAAAT ACGAATTTTG GAGAAGCATA TTGCGCTGCA 
GGTGATCAAA TTGCAGGAAA GTGTGGAATC CCAAATATGT ACTCGTTTGA ACTTACGGGA 
ACTGCAGAAG ATATAGAAAA AGTAGCGCAG GGCATACCGA GATTTTTAAA ACAACTCAAA 
GAAACAGAAG AAACAAAATA A
 
Protein sequence
MCEQENITQQ SEPESSAQGE SIGAVVYFSS VSENTLRFVQ NCDFPSNNVN VYRIPLRPKE 
PELNVREPYV LIVPTYGGGN IAKAIPMQVR KFLNNRENRS FIRGVISSGN TNFGEAYCAA 
GDQIAGKCGI PNMYSFELTG TAEDIEKVAQ GIPRFLKQLK ETEETK