Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0141 |
Symbol | metA |
ID | 8710042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 162847 |
End bp | 163878 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 646482260 |
Product | homoserine O-succinyltransferase |
Protein accession | YP_003373405 |
Protein GI | 283782651 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1897] Homoserine trans-succinylase |
TIGRFAM ID | [TIGR01001] homoserine O-succinyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.711356 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTATTA AGATTCCTGA AGGATTGCCA GCGCGAAGCA TATTAGATGC TGAGCGAATT TTTGCATTGG AACGCCCAGA AGCAGAACAG CAGGATGTTC GACCACTTCG TTTGTTGATT TTGAATCTTA TGCCCAAAAA AATCGAGACA GAAACTCAGC TTTTGAGACT CATCTCTAAG TCTCCTTTGC AAGTCGACGT CGATTTTATG AAAACTTCTA CGCATGTATC AACGCATGTT AGCGCTGATC ATTTAGTAAA ATTCTATGAA AATCTTGACG CACTTCGTAA CAACTATTAC GACGGATTTG TTGTGACGGG AGCTCCTGTT GAGCATATGG AATTTGAAGA TGTCGACTAC TGGCACGAAT TTACGCAAAT TCTTGACTGG GCATCAACAC ACGTTTTCTC AACAATGTAT TTGTGCTGGG GTGCAATGGG TGCGCTTTAC TATCGATATG GCGTAAAAAA GCATGTTCTC AGCAAAAAAG TTTTTGGTGT GTTCCCGCAA TATTTGCAGG ATGAGTACTG TTTTCTTACA AATGGTTTTG ATGAAATCGC TTTACAACCG CATTCTAGAA TAGCGAGTGT TGATGTTGAC AGCATTTCTG CAGATCAGCG TTTACAAATT CTTACGTATG GTCCCGAATC TGGTCCGGGC TTAGTTGCTA CGCGTGATTT TTCTGAAGTT TTTGCGCTAG GACACTGGGA ATATGGCAAA ATGACTCTTG CGCAGGAATA TGAGCGTGAC ATGTTAAAAG GTTTGAGCAA CGTTCCATTT CCTTACAACT ATTTCCCTCA TGACGATCCA AAATTAGAGC CATTATTTTC TTGGCGCGCG CACGCGAATT TGCTTTGGCG CAACTGGCTT AATTGGGTGT ACGAAACTAC GCCTTACAAT CTTTCTGATA TTCCTCATTT AAGAACTGCT GGAAGGCTTG GAACTGAACG TTCTATAAGA CATGAGCCAG CTTCTCCGCG CTCCGATAAT TTTTATCCAT TTGACGGAGT TAAGTACGGT ATGAATAAAT AA
|
Protein sequence | MPIKIPEGLP ARSILDAERI FALERPEAEQ QDVRPLRLLI LNLMPKKIET ETQLLRLISK SPLQVDVDFM KTSTHVSTHV SADHLVKFYE NLDALRNNYY DGFVVTGAPV EHMEFEDVDY WHEFTQILDW ASTHVFSTMY LCWGAMGALY YRYGVKKHVL SKKVFGVFPQ YLQDEYCFLT NGFDEIALQP HSRIASVDVD SISADQRLQI LTYGPESGPG LVATRDFSEV FALGHWEYGK MTLAQEYERD MLKGLSNVPF PYNYFPHDDP KLEPLFSWRA HANLLWRNWL NWVYETTPYN LSDIPHLRTA GRLGTERSIR HEPASPRSDN FYPFDGVKYG MNK
|
| |