Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0096 |
Symbol | |
ID | 8710024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 114947 |
End bp | 115678 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 646482217 |
Product | hypothetical protein |
Protein accession | YP_003373363 |
Protein GI | 283782609 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.168357 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAATA ATTTTCGCGC TTGGCTTGAA GGTAGGCATT ATATTGTTGC AATCGTTGCA ATTTTATTGT CCGTAGTCCT TCCTTCTTTA ATGCTTGTTA TATTCAGATC ATTTGTAACG CAGTTGCCAG TTTATGTTGG TTATATTTGT TTGCCAGATT CTGCTAATGT GCATAATGCG GTAGAAGGTA TAACGTTTCA ATGTCAATCT GGTAGTAGTG CTGTTAATTT TGTTGTTCCT CTGTATGAAG TTATTGTAGT TGGGTTTATT GCCGCGGCAT TCGTTTGTCT TGCTCCGATT ATGGTATCGT GGGAACGTTT CGTGATGAAA AGGTTGCGAA TATATGCATT GAGTGCTGCT TTATTGTGTT TGTTTGTTTC ATTTGGCGCT TCAGTGTTAA TTGTTCGTAT AATTGATTTG CAGTTATTGA GTACATTGCA GATGATTTTA GGTAATGCTT GGATTGATAT TGTGCTCATA ATGATTGGAT TAGCCTGTTT TGGAAGGTTT TACGGCCTTG CATTTGGTGT ATTTTTAGCG GTGATGAATA TTGCCACACA AGGTTTGCAA AGTAAAATTG GATTGATTTT GCGATGGTAT CCTTCTGGAA CTTTGCCTGT AATTCCTGGA CAATCCATAT TGTTATACGT CATTGTTGTG CTTACTGTAA TTGCAGTTTG CCTATGGAGT GGCACGTGTG GACGTGGATT GCTTTATTTT GAACGTGCTT AA
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Protein sequence | MKNNFRAWLE GRHYIVAIVA ILLSVVLPSL MLVIFRSFVT QLPVYVGYIC LPDSANVHNA VEGITFQCQS GSSAVNFVVP LYEVIVVGFI AAAFVCLAPI MVSWERFVMK RLRIYALSAA LLCLFVSFGA SVLIVRIIDL QLLSTLQMIL GNAWIDIVLI MIGLACFGRF YGLAFGVFLA VMNIATQGLQ SKIGLILRWY PSGTLPVIPG QSILLYVIVV LTVIAVCLWS GTCGRGLLYF ERA
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