Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0089 |
Symbol | |
ID | 8709559 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 105986 |
End bp | 106801 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646482210 |
Product | FAH family protein |
Protein accession | YP_003373356 |
Protein GI | 283782602 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000675246 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGAATTG CACGTTTTTC ATATAATGAA GTTCCGCAAT ACGCTTTCGT TCAAAAAGAC AAAGCCGACG GTAAAGATTA TTTAGTAGCG CTTGAAGGTC ATCCTTTAAG CTCGCAAGGA GTTAAACCAA CTGGTAAACG TTACGCGTTG GATGCGGATG GCGTGCGCTT GCTTGTACCT GTAATTCCTT CGAAAGTTTA CGGCTTGGCA AAAAATTATG ATACACGTTC CGACGATGAG CGCGCTACTT CTTCTGCGGC TTCTTCACAT ACTGCTGCAG ATATGGTGAT TTTTACAAAG CCGAGCACTT CTGTAATAGG ACCTGACGAT CCGATTGTTA TTCCTACTTG CTCAAACGAC ATGAATTTTG AGCCAGAAGT GGCAGTTGTT ATGGGCAAAA TCGCCAAAAA TGTGACGGCA GATACTGCAA TGAATTACGT TTTTGGCTTT ACATGCGTAA ACGACGTAAC TTTACGAGAT TGCGCAGGAA GCGACCCAAT GTGGACGCGC GCAAAAGGTT TCGACACTTC TTGCCCGCTT GGACCTTGGA TTACAACCGA GCTAAATTGG CGCGATGCAC ATATTTCATT TACGCTTAAT GGTGAAAATG TGCCAGAAGC GAGTGGCACC ACAGCTCGAC TTATTCACAG TATTCCTGAG CAAATTGCTG CGATTTCAAG CTTCTCAACG CTTCTTCCGG GAGATGTGAT TTTGACAGGA ACTCCATACC CGGCTGGGAC TTTACGCGCG GGTGACGAAG CTATCGTGCA CGTAGATGGC ATTGGCTCTT TGCGAAACGT TGTTGTAAGT GAATAA
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Protein sequence | MRIARFSYNE VPQYAFVQKD KADGKDYLVA LEGHPLSSQG VKPTGKRYAL DADGVRLLVP VIPSKVYGLA KNYDTRSDDE RATSSAASSH TAADMVIFTK PSTSVIGPDD PIVIPTCSND MNFEPEVAVV MGKIAKNVTA DTAMNYVFGF TCVNDVTLRD CAGSDPMWTR AKGFDTSCPL GPWITTELNW RDAHISFTLN GENVPEASGT TARLIHSIPE QIAAISSFST LLPGDVILTG TPYPAGTLRA GDEAIVHVDG IGSLRNVVVS E
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