Gene HMPREF0424_0080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0080 
Symbol 
ID8709949 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp94686 
End bp95339 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content48% 
IMG OID646482201 
Producthypothetical protein 
Protein accessionYP_003373347 
Protein GI283782593 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones0 
Fosmid unclonability p-value0.00000000158051 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCCAAGTC CTACAGGCTC TGCCCGCCCA AGCCGACCTG CACAAATGGA TCCTGCGATG 
CTCGCGCAGA TTGAAGGGGG CACGGACCCA CAGGTTGTAA ACGAAATTAG CCACACCTCC 
GCCGCTGTTT TACTTAACCG CGTTCATAAA ACGCAGTCGC CGGAAATCGT TGAGCGCGTG 
CTGAATTTGG TTGAAAATGA GGGCATTGAA GTTATTGCAG ATTTGTGGAG CCATGCGGAA 
GCAGAGTCTA TTCCTGGAAT GTTGTGGCGA CTGTACTTAC TGCGCATGTC TCTACGAAAG 
CAGCGCGAAG CTTACGCCGA GTACTGGAGC CTTGGCGAAC CTGAAACAAC AAGCGCATCC 
GCTATTACAG GAATTGACGA AGCTCCTACC GGAGAAGATA TTGCGCGACT TGCAGATTCT 
ATTCTTTCTG GTGCTTTTAC AGGCGATTTT GCTGTAGCGC TTTACCGATC TTCAGCTTTT 
ACTTCGATTA TTGCGCGCGG AATGCAAGTT TACGCAAAAA AGTTAGACAA ACAAGCAAAT 
ACAATGCACA CGCAGAAAAT TGCAAAAGTT TTGCATATCT CAGCAAATAT GCACGCACTT 
TCGTTATCTT TTGCTCATGG AGCGAAATTA TGGCGCGCAG AAAAGTTGGA ATAA
 
Protein sequence
MPSPTGSARP SRPAQMDPAM LAQIEGGTDP QVVNEISHTS AAVLLNRVHK TQSPEIVERV 
LNLVENEGIE VIADLWSHAE AESIPGMLWR LYLLRMSLRK QREAYAEYWS LGEPETTSAS 
AITGIDEAPT GEDIARLADS ILSGAFTGDF AVALYRSSAF TSIIARGMQV YAKKLDKQAN 
TMHTQKIAKV LHISANMHAL SLSFAHGAKL WRAEKLE