Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0069 |
Symbol | |
ID | 8709443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 82062 |
End bp | 83477 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646482190 |
Product | hypothetical protein |
Protein accession | YP_003373337 |
Protein GI | 283782583 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0105826 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAATGGA ATGACGCTCC TCAATTAGAC CCGCGTGCTG TGCAAGCAAC TTCGGTATCT GCACAGGACG AGAATGCGTC TTCTCAAGAG CCGCAGGCAC TGAAGATTAC TGCGGCTAGT TCAAATCCAA AAATGTTTAC ACTGCCTTGG GAATTACCAC TTTCTCAATG GCCTGCTGAT TTATTCGTGA ATTTGCCGCG TGGTATTTCT CGCCACGTTG TGCGATTTGT TCACGTTGGC GATGAAGTGT ATGCAATGAA GGAAATTACT CGTCAAGTTG CAGAACGTGA GTATGAGCTT TTGCGTAGGC TTCGTAAACT TGAGTTGCCT ACAGTTACTC CTATAGCTGT TGTTGCAGGA CGCCATGACG CTAATGGTGA AAAGCTTGAG GCAATGTTAG TTACGAAACA TTTGAAGTTC TCACTACCAT ATCGTGCATT ATTTGCTCGT ACGTTGCGTC CGGATACTGC AGAGCGCCTT ATCGATGCGC TTGCTGTTCT TATGGTGCGC TTGCATCTTT CTGGCTTCTA TTGGGGCGAT GTATCGCTTT CCAACGTGCT GTTTTTGCGA GATGCAGATG CTTTTTCTGC ATTCCTAGTT GACGCAGAAA CTGGTGATTT GCATGGAAGT TTAACAGAAG GTCAACGAGA ATACGATATT GATTTAGCTC GAACCAACAT TATTGGTGAG CTTATGGATT TGAGCTCCGG TCAGCTTTTA CCGACAGAAG TAGATGAAAT CAGTATAGGC AATCGTCTAG TAGATCGCTA TCATTCGCTT TGGAGTACGC TTACTGACGT TGATAAGTTC AGTCCTGATG AGATGTGGCG AATTGAACGT CGTGTTAATC GTCTAAATGA GCTTGGTTTC GATGTTGATG AGTTGGAGAT GAAGACTTCA GAAGATGGTC GAAGGGTTTT GGTTCGACCT CGAGTTGTGG ATGCTGGCTA TGCTTCCCGC AAGCTTCTTC GTCTTACTGG ATTGGATGTT CAAGAGAATC AGGCTCGAAG GCTGCTAAAC GATTTGGATG CATATCGCAC TTCTACATGG CGTCAAGGTG AAGAGCTGGA AATCGTCGCA ACTGATTGGA TGCGTGAAAT TTTCGAGCCA ACAGTTCGTA TGATACCTCC TGAATTCCGT TCGCAAATTG AACCAGCTCA GTTCTTCCAT GAAGTGTTGG ATCATCGTTG GTTTATGGCA GAAAAAGTTG GCCATGACGT TGCTATGCAA GATGCTGTGA CAAGCTATAT TAAAAATGTG CTTCCTCAGT ACAAAATGGA TAAGCATGTT CTTGCTGCTA TTAATGCAGA TGCTGATTCT GGCGTTGTGG ATGATGAATA CACGTATTCT TCTCCAGCAC CTGTAGGTCA CGATATAGAT GAAGATGATC AAGATGCTAG TGTTTGGGCA AGTTGA
|
Protein sequence | MEWNDAPQLD PRAVQATSVS AQDENASSQE PQALKITAAS SNPKMFTLPW ELPLSQWPAD LFVNLPRGIS RHVVRFVHVG DEVYAMKEIT RQVAEREYEL LRRLRKLELP TVTPIAVVAG RHDANGEKLE AMLVTKHLKF SLPYRALFAR TLRPDTAERL IDALAVLMVR LHLSGFYWGD VSLSNVLFLR DADAFSAFLV DAETGDLHGS LTEGQREYDI DLARTNIIGE LMDLSSGQLL PTEVDEISIG NRLVDRYHSL WSTLTDVDKF SPDEMWRIER RVNRLNELGF DVDELEMKTS EDGRRVLVRP RVVDAGYASR KLLRLTGLDV QENQARRLLN DLDAYRTSTW RQGEELEIVA TDWMREIFEP TVRMIPPEFR SQIEPAQFFH EVLDHRWFMA EKVGHDVAMQ DAVTSYIKNV LPQYKMDKHV LAAINADADS GVVDDEYTYS SPAPVGHDID EDDQDASVWA S
|
| |