Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0053 |
Symbol | |
ID | 8709728 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 61313 |
End bp | 62665 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 646482176 |
Product | ParB-like protein |
Protein accession | YP_003373324 |
Protein GI | 283782570 |
COG category | [K] Transcription |
COG ID | [COG1475] Predicted transcriptional regulators |
TIGRFAM ID | [TIGR00180] ParB-like partition proteins |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGGAA ATAAGTCTCG CCTGGGTAAA GGTTTAGGTG CTTTGTTCCC AGCTTTGCCT GGCGAGGATG CGCTTGCCGA TGCATCTAAT AATTTGCAAT TTAATGTTTC ACATGAAACA AAAAAATCCG AATCTGTGGA TAGTCAATTA GAAGAACAAG CAAAAGTTTC ACGTGAAACG TTACATAAAG ATAATAATCA ATCAAAAAAT GTTTCACATG AAACAAAGGT CCCTAGTATG AGCAATTCAA TTGCTCCTCA CGCGGATAAG AGTAATAACA AAATAAAGAA TGTTTCACGT GAAACCGTGC CGTCAATTCA TACTAACAAG CATTCTCATA AACGTTCAAC TATGCCATCT CTTGGAGATG TCACTAGACC TATGGATTTC TTTTTTGGAG ATTCAGCATC AACGACATTT ATGTCGTCTA AGGCAAAAAA TAATGAAGAA ACCGTTATTG GTGAAAAAAA TAACGCTGCT GAAAAATCGA ATAAAACCGC AAAAAATGAG CCTTTGAAGC CAGTAAAAGG TGGATATTTA GCTTATCTTA AGCCGTTAGA TATTGTTCCT AATGCGCATC AACCTCGAAC AATTTTTGAT GAAGATGAGC TGCGAGAACT TGCGTCATCT ATTAAAGAAG TCGGCGTTTT ACAGCCTATA GTTGTGCGAC CTATTGTTGA TGCAGATAAA AATGATGAAC AAATTGCACA TTATGAACTT ATTATGGGCG AGAGAAGATG GCGTGCTTCT CAGCTAGCTG AACTTGATAC AGTTCCAGCG ATTGTGCGCA CAACTGCTGA TGAAAATATG TTAAGAGATG CATTGCTTGA AAATCTTCAT CGCGTTGCTC TTAATCCTCT TGAAGAAGCG GCAGCATATT CTCAGATGAT AGATGATTTT GGTTTAACAC AGATTCAGCT TTCTCAGTCT GTATCAAAAT CACGTCCACA AATTGCTAAT ACTTTAAGAC TTCTCAATCT TCCTGCTAGC GTGCAAAAAC ATGTCGCCTC AGGCGTGCTT TCTGCAGGTC ACGCACGAGC ACTACTTGGC TTGGAAAATC CAGAAGATAT GGAGAGTCTA GCCAATCGCA TTATTGCAGA AGGATTGTCA GTTCGTAGTA CTGAAGAGAT TGTTTCGTTG AAGAATGAAG ATACATCTCA TGGAGCAGTA CGTACGCGTG TGCGTCGCAA TAATCAGTGG TCTTCTTCGC CTGTGCGCAA GCAGCTTGAG GAGCATTTTG CTACCAAAGT TTCTATTAAG GGCACAGAAA ATCATGGAAG AATCGAGATT GTCTTTTCTT CTCCTGAAGA AATGCAACGA ATTATTGGTT TACTTGTTTC TAAAAAAGAA TAG
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Protein sequence | MSGNKSRLGK GLGALFPALP GEDALADASN NLQFNVSHET KKSESVDSQL EEQAKVSRET LHKDNNQSKN VSHETKVPSM SNSIAPHADK SNNKIKNVSR ETVPSIHTNK HSHKRSTMPS LGDVTRPMDF FFGDSASTTF MSSKAKNNEE TVIGEKNNAA EKSNKTAKNE PLKPVKGGYL AYLKPLDIVP NAHQPRTIFD EDELRELASS IKEVGVLQPI VVRPIVDADK NDEQIAHYEL IMGERRWRAS QLAELDTVPA IVRTTADENM LRDALLENLH RVALNPLEEA AAYSQMIDDF GLTQIQLSQS VSKSRPQIAN TLRLLNLPAS VQKHVASGVL SAGHARALLG LENPEDMESL ANRIIAEGLS VRSTEEIVSL KNEDTSHGAV RTRVRRNNQW SSSPVRKQLE EHFATKVSIK GTENHGRIEI VFSSPEEMQR IIGLLVSKKE
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