| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_4010 |
|---|
| Symbol | |
|---|
| ID | 5166955 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | - |
|---|
| Start bp | 4664010 |
|---|
| End bp | 4665533 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640551489 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_001232727 |
|---|
| Protein GI | 148266021 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000241761 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA TACTGCTAAT GCTTGTAATG CTTCTGCCGG CGCCTTCGGC CTTCGCTGTG
GATCAACCGT TTTTGCAGCA GGAGGCAATG GCGCATGAAG CAAATCTCTC CCTTTCTGAT
CCGGCAAAGC TTATCGGCAA AACCGAACAG TCCCGCAGCC GGCTTGCCTC CTCCACCAGC
GAAGGACACC TGCTCCAGGC GCTTGAACTT CCCCCTTCCG AAATTTTCTC ACTTGAAGAG
GCCCTGGCCA AGCAGGTAGA AACGGACTTC GATCTCAAGC TCCCGGAAGA GGAGCTCCCC
GAGTCCGACA TTCCCCTGAC CTTCAACAGC AAGGTAGAAT ATTTCACCCA CTATTTCCAG
ACCAGCGGCA GGAAAGCCTT TTCCAAGTGG CTTTCCCGGT CGGAACGCTT TATCCCCATG
ATGCGGGAAG TACTGAAAAA AGAGGGGCTC CCCGAGGATC TCGTTTATCT GGCCATGATC
GAGAGCGGCT TTTCTCCCCA CGCCTATTCC GTTGCAAGTG CCGTGGGGCC GTGGCAGTTC
ATGTCCGCTA CCGGCAAGCG TTATTCCCTG CGAATAGATT CGTGGATCGA CGAGCGCCGT
GATCCCCTCA AATCTACCGT TGCCGCAGCT TTGTACCTCA AGGAGCTCTA TGCCATGTTC
AACAACGACT GGTATCTGGC TGCCGCAGGT TACAATGCGG GGGAAAACAA GATCCTGCGT
GCCATCAACA TGTATAACAG CAGGGATTTC TGGCAGCTTT CCAAAGGCGC ATACCTTAAG
CGCGAGACCA AGGATTATGT GCCGAAACTG CTGGCGGCGG CAATTATTGC CAAGGAACCG
GCTAAATACG GTTTTGCCGA CGTCGCCTAT CTCCCCCCCG TGGAGTTCGA TACGGTGACG
ATTCCCTCCA GGACCGACCT GGAAGTGGTG GCCAAAATCT GTGAAATTCC TTACCAGGCC
GTTCGGGACC TGAATCCCGA GCTGCGTCGC TGGTGCACTC CCCCCGATTA TCCCGGCTAC
CAGTTGAAAA TTCCCCGGGG AAAGAAGGCG GCGTTCGAGG CGGAGTATGC AAAGATCCCC
GAGGACAAGC GTTACACGGA GAAGATCCAG TATGCCCGTT ACAGAGCTAA AAAACGCGAT
ACGCTGGCAT CTGTGGCAAA GCGCTTCGGC ACAACCAGTC AGGTGTTGGC GGAACTGAAC
AGCCTCGGCA AGGTGAAGCG GCTGCGGGGC AAGGTGCTGA TTGTTCCCGT GCAGATAGCC
GCCCTGGAAG GTCCGTCTGA AAAAGGTGCG CCGCGCCCTT CGCATGCCGG ATCGGATAGT
AAATCGTTCA ACAAGTACTA CACGGTTAAA AAGGGGGATA CCTTGGCGGC TCTTGCCAAG
CGTTTCAATG TCTCAGCCAG AATCCTCTCC CTCTGGAACA ACATCAAAAC CAGGGTAGCC
TTGCGGCCTG GCAAGCGGAT AATCGTTGCC AAGTATGTGG AGAAAAAGGG CGTGATGACG
AATGCTGCCG AAGATAATGG CTGA
|
|---|
| Protein sequence | MNKILLMLVM LLPAPSAFAV DQPFLQQEAM AHEANLSLSD PAKLIGKTEQ SRSRLASSTS
EGHLLQALEL PPSEIFSLEE ALAKQVETDF DLKLPEEELP ESDIPLTFNS KVEYFTHYFQ
TSGRKAFSKW LSRSERFIPM MREVLKKEGL PEDLVYLAMI ESGFSPHAYS VASAVGPWQF
MSATGKRYSL RIDSWIDERR DPLKSTVAAA LYLKELYAMF NNDWYLAAAG YNAGENKILR
AINMYNSRDF WQLSKGAYLK RETKDYVPKL LAAAIIAKEP AKYGFADVAY LPPVEFDTVT
IPSRTDLEVV AKICEIPYQA VRDLNPELRR WCTPPDYPGY QLKIPRGKKA AFEAEYAKIP
EDKRYTEKIQ YARYRAKKRD TLASVAKRFG TTSQVLAELN SLGKVKRLRG KVLIVPVQIA
ALEGPSEKGA PRPSHAGSDS KSFNKYYTVK KGDTLAALAK RFNVSARILS LWNNIKTRVA
LRPGKRIIVA KYVEKKGVMT NAAEDNG
|
|---|
| |