| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_3978 |
|---|
| Symbol | |
|---|
| ID | 5166124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | - |
|---|
| Start bp | 4622045 |
|---|
| End bp | 4623451 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640551455 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_001232695 |
|---|
| Protein GI | 148265989 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACAA TCGACGAGAT AATCGAAGCA ACCGGTGGGA CCAGGATCGG CAGCGGCAAC
GATGCTGTTT CCGGCGTTTC CACCGATTCG CGGCAGGTTG CTGCCGGTGA GCTCTTCGTT
GCTTTAAAGG GAGAACGATT CGACGGACAT GACTATCTGG AGGCTGCGGT TGCCAGAGGT
GTCCGCGCTT TTCTTGTTGC TGCGGACCGG CTTGCCGGCA AGCAACCACC AAACGACGTA
ATTTATGTGG CAGTACCCGA TACCCTAAGG GCGCTCGGTG ACCTGGCTGC CTGGCATCGC
AGCCGGTTCG ACTTGCCGCT GGTCGGGATC ACGGGGAGCA ACGGCAAAAC CACCACCAAA
GAGATGCTGG CCACAATTCT GGCGCAGACC GGGCCTGGAT TGAAGACCAG CGGCAATCTG
AATAACCTGA TCGGCTTACC GTTGATGCTG CTGCGCCTGA CGAAAAGGGA TCGCTGGGCG
GTCCTTGAGA TGGGAATGAG TGAGCCTGGA GAAATAGACC GTCTGGCGGA AATGGCGAAC
CCACGGATAG GGGTCATTAC CAATGCTTTT ACCGCTCACC TGGAGAGCAT GGGGAGTGTG
GAGGCTGTGG CAAAGGCGAA AGGCGAGCTG TTCATGCGTC TCAAGACAGA CGGCTGGGCA
GTGTATAATG CCGACGACCC GCTCATCTCC CGATGCCCGG CTCCTGCCGG CGTAAAGAGG
CTTTCCTTCG GCCTCCGCGG GGCGGAGGTG AGTTCAGAAG GGATTGAGAG CCTAGGCAGA
GAAGGGCTCC GCTTCACCCT TCGCCTTCCG GGAGTGGATG TGCCGGTGCG GATGAAGGCT
TATGGCCTGC ATAATGTGTA CAATGCCCTG GCTGCCGCCG CTGCCGCCCA TCTGCTCGGA
GTGGACCCGG AGCTGATCCG TTCGGGGCTG GAGGAGTTCA CCCCCTATGA CAAACGGTTC
AGTCTGGAAG AGATCCGCGG CGTAGTGCTC GTTGATGACA GCTATAATGC AAATCCGGCC
TCCATGGCGG CGGCGCTTGT GACTCTCCGC GATATACGCG AAGAGAGCCG TGCCATTGCG
ATCCTTGGAG ATATGCTGGA ACTGGGTACA GGCTCTGTGG CAGCCCACCG TGAGGTGGGG
CTTCTTGCCG CAACCTGCGT AGAGCGCCTC TACGCCATGG GCGAGATGGC GGAGACTGTC
GCGGCCGGAG CGGTTGACGG TGGTCTCAGC CCGGAAAACA TCGTCGTGGC TCGTACCCAT
GAGGAGATTA TTGCCGACCT GCGCCGCAGG GTGGCCAAGG GGGACAATAT TCTGGTCAAG
GGGTCGCGCG GTATGCGCAT GGATATCGTG GCGGAAGCCA TCAGGCAAGG CTTTGCTCTG
CCTGGTGAAA AGAACGAGGT CGCCTGA
|
|---|
| Protein sequence | MFTIDEIIEA TGGTRIGSGN DAVSGVSTDS RQVAAGELFV ALKGERFDGH DYLEAAVARG
VRAFLVAADR LAGKQPPNDV IYVAVPDTLR ALGDLAAWHR SRFDLPLVGI TGSNGKTTTK
EMLATILAQT GPGLKTSGNL NNLIGLPLML LRLTKRDRWA VLEMGMSEPG EIDRLAEMAN
PRIGVITNAF TAHLESMGSV EAVAKAKGEL FMRLKTDGWA VYNADDPLIS RCPAPAGVKR
LSFGLRGAEV SSEGIESLGR EGLRFTLRLP GVDVPVRMKA YGLHNVYNAL AAAAAAHLLG
VDPELIRSGL EEFTPYDKRF SLEEIRGVVL VDDSYNANPA SMAAALVTLR DIREESRAIA
ILGDMLELGT GSVAAHREVG LLAATCVERL YAMGEMAETV AAGAVDGGLS PENIVVARTH
EEIIADLRRR VAKGDNILVK GSRGMRMDIV AEAIRQGFAL PGEKNEVA
|
|---|
| |