| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_3459 |
|---|
| Symbol | |
|---|
| ID | 5163208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | - |
|---|
| Start bp | 4065206 |
|---|
| End bp | 4066717 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640550946 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_001232188 |
|---|
| Protein GI | 148265482 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGAA ACGAACCATT TAACACGTAC CACCAACGTT ACGACAACTG GTACGACACC
CATGGTGCCG CCTACTGCTC CGAACTGCTG GCAGTACGGG CGCTGTTGCC GTGGAAGGGG
CTCGGCCTGG AGATCGGCGT GGGAAGCGGG CGCTTCGCGG CGCCACTTGG CGTTCGGGTA
GGTGTCGATC CTTCGGCGGC CATGCTGAAA CTTGCCAGCG CAAGGGGCAT TAGTGTCATG
CGGGGCGTCG CCGAGCGGCT CCCGTTCGCT ACCGCAAGCT TTGATTACGC CCTGATTGTA
ACTACCATCT GCTTCGTGGA TGATCCCCGC GCCATGTTGC GCGAGGCAAG GCGGGTCATC
AAGCCTGAGG GGAGTCTGGT GATCGGGTTA GTCGACAAGG GGAGCGCCTT GGGGCAGCAG
TACCTGGAGA ATCGGTCCCA AAGCGCTTTC TACCGCGAGG CCACCTTCTA CCGCGCCGAA
GAGGTCGAGA AAATGCTGAA AGAAAGCGGC TTCCCCAGCC AGGATTGGGT GCAGACCCTC
TTCAGGCCCC TGCAGGAGAT GAGGGAGGTC GAGTCCTTTC GCGCGGGACG GGGCATCGGT
GCCTTCGCCG TGGTCAGAGG CATGGAATCG CTGCACGATA CGTTAAAGGA AGTGATGAAG
AGTAACGGGA TGTTCCAGCG GTTGGCCGAT TCTTCGGCGG AATGGCTCTA CTGGCGGACA
CCGGAGGGGA AAATGCGCTA CATTTCTCCG GCAGCCGAAC ATATTACAGG CTTCAGTGTC
GAGGAACTGT CTCATTTCCC GGAAACCTGC GATGCTATCA TTCATTCCGA TGATCATGAA
CTATGGCGCC TTCATGTCCG CGAGGTAGAC CGGGGAGGGG CGTCCAGTCC AATCGAATTC
CGCATTGTTA CCAAACAGGG GGAAATGCGC TGGATTAGCC ACATCTGTCG TCCGATCCAC
GACAACAGTG GTACTTTCTT GGGAATAAGC GGCAGCAACC GCGATATAAC CGAACGTAAG
CAGGCGGAGG AGCAACTCCG CTACCTGAGC ACCCACGACA ATCTGACCGG CCTGTACAAC
CGGGCTTACT TCGACGCGGA ACTCGGGCGG CTTGCCGGCG GAAGGGAATT CCCCATCAGC
GTCGTTATGG CGGATGTTGA TGGGCTGAAA GAAGTGAACG ACCGCCATGG GCATGCGGTG
GGGGATCGAC TGCTTCAGGA GGCAGCTAAA GTCCTGCTGG CGGCTTTTCG CAGCGATGAT
GTGGTGGCGC GCATAGGCGG TGACGAGTTT GCGGTCCTCC TGCCCGGCGC GGACAGCGCT
ATGGTGAAAG ATATTCTCAA GAGGGTCGAA AGTTGCCAGG CAGGAGTCAA CCGTGCGAAC
AGCGTCTTCA GATTGAGCCT CTCCTTGGGC ACGGCAACCG CAGAAACGGG GGAAAGCCTT
GGGGAAGTCC TCAAGCTGGC CGACGAGCGG ATGTATAGGG AGAAATTCGG CAGAAAAGGG
CGGGGTGCAT GA
|
|---|
| Protein sequence | MSGNEPFNTY HQRYDNWYDT HGAAYCSELL AVRALLPWKG LGLEIGVGSG RFAAPLGVRV
GVDPSAAMLK LASARGISVM RGVAERLPFA TASFDYALIV TTICFVDDPR AMLREARRVI
KPEGSLVIGL VDKGSALGQQ YLENRSQSAF YREATFYRAE EVEKMLKESG FPSQDWVQTL
FRPLQEMREV ESFRAGRGIG AFAVVRGMES LHDTLKEVMK SNGMFQRLAD SSAEWLYWRT
PEGKMRYISP AAEHITGFSV EELSHFPETC DAIIHSDDHE LWRLHVREVD RGGASSPIEF
RIVTKQGEMR WISHICRPIH DNSGTFLGIS GSNRDITERK QAEEQLRYLS THDNLTGLYN
RAYFDAELGR LAGGREFPIS VVMADVDGLK EVNDRHGHAV GDRLLQEAAK VLLAAFRSDD
VVARIGGDEF AVLLPGADSA MVKDILKRVE SCQAGVNRAN SVFRLSLSLG TATAETGESL
GEVLKLADER MYREKFGRKG RGA
|
|---|
| |