| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_3024 |
|---|
| Symbol | |
|---|
| ID | 5165693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | - |
|---|
| Start bp | 3518031 |
|---|
| End bp | 3519749 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640550519 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001231769 |
|---|
| Protein GI | 148265063 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCAC GACGCCGGAA CAATCGCTGG AGCTTGGTCG GGACGGGAAT CGGCCTGATG
CTGTTTTTCT GGGTGGCGGA TTGTTATCTG GACGGGGTTT TCTTCGACGA AGGTAGCTTT
GTTCAGCAAA TCCTGCATCC TGACGGGCAG GAACTGGCAT ACCGGATACA GTCGATGCTC
TTTCTCCTTG TCTTTATAAT TTATGCCTGG CGGAAATCCC TGACACAGGA ACGCATCTCC
TCTTCCCTGG AAGAAGCGCT GACCAACCTG GCCGCCGAAA AGGCCCGCTC CGAGGCAATC
CTTGCCGCCA TGCCCGATGC CGTGAGCGTC CAGGACACCG ACATGAAAAT CCTCTACCAG
AGCCCTGGCA CCAGGAAGGT GATGGGAGAC CATGTGGGGG AATACTGCTA TGCCGCTTAT
CATCAGCTGC CGTCGGTCTG CCCGGACTGC AATCTCGTCG AGTCTTTTGC CGACGGACTT
CTCCATCGGC GGGAAACGAG CTCTCCCAAT GAACGGGGCC CCCGCCATGT GGAGATAATA
TCGGCTCCGC TCCGGGATGC AGCGGGACGG ATCATCGCCG GTATAGAATC GGTGCGCGAC
ATCACCGACC GCAAGATCGC AGAAAACCGC CTCAGGCAGC AGCTGGCGGC CATCGAGGCT
TCGATGGACG GCATCGCCAT TCTGAATCCC GGCGGCGAAT ACCTCTACCT CAATAAGGCC
CATGCCTCCA TATATGGCTA TCCTTCCCAG GTTGAACTGA TGGGAAAGAG CTGGCATGTC
CTCTATCCTG CCGACGAGCT GCAACGGCTG GAGTCTCTCA TCTACGAGGG GGGCGACAAG
CAGCGCGGGT GGCGCGGCGA GGCAACCGGC CAGAAGAAGG ACGGCACCCT GTTTCCCCAG
GAGATATCCC TCACCGTTCT GGAGGATGGC GGCATTGTCT GCGTGGTGCG CGACATATCG
GAACGGCAGA AGTCCGAAGG GGAGATCCGC AAGCTGAACG ACAGCCTGTG CCAGCAGGCT
CTCGACCTGC AGGCCACGAA CCGGGAACTC GAGGCGTTCA GCTATTCCCT CTCCCACGAC
CTGCGCGCCC CCCTTACCGG TCTGTATGGG GCGGCCCAGG CCCTTGCCGA GATCTGCAGC
GACAAGATGG ACGATACCGG CCTGACCCTC CTCAACGCCA TCCGCCAAGG CTGCGAAAAT
ATGGAAGAGT TGATCGAGGC GATGCTGGTG CTGTTCAAGG TGTCCAGGAC CGAACTGAGC
TATGCGGAGG TGGATTTGAG CGCCCTGGCC AATGCGATCA TGGCCGAACT CCGTCTGCGT
AATCCTGAAC GTGCGGTGGA ATGGCGCTTT GTCGAGGGAA TTGTGGCATG GTGCGATCCC
CACCTGGCCC GCATCCTTCT GGAAAACCTG ATCGGCAATG CCTGGAAGTA TACTGCCAGA
CATGATCACC CCAGGATAGA GTTCGGACAG AAATCGAGCG ACGGGGCCGT CCAGTTCTTC
GTGCGCGACA ATGGGGTCGG TTTCGATATG CGGGATGCCC AAAGGATCTT CAAACCGTTC
CAGCGTTTGC ACCGTTCCGG TGATTTTCCC GGCACCGGAA TCGGTCTCGC CACCGTCCAA
AGGATCATCG ACCGACATGC CGGCCGAGTC TGGGCAGACG GGGCGGTCGG TCTGGGCGCC
ACGTTCTTTT TCACCTTTCC CTTGCCGGAT AAGGAGTGA
|
|---|
| Protein sequence | MAARRRNNRW SLVGTGIGLM LFFWVADCYL DGVFFDEGSF VQQILHPDGQ ELAYRIQSML
FLLVFIIYAW RKSLTQERIS SSLEEALTNL AAEKARSEAI LAAMPDAVSV QDTDMKILYQ
SPGTRKVMGD HVGEYCYAAY HQLPSVCPDC NLVESFADGL LHRRETSSPN ERGPRHVEII
SAPLRDAAGR IIAGIESVRD ITDRKIAENR LRQQLAAIEA SMDGIAILNP GGEYLYLNKA
HASIYGYPSQ VELMGKSWHV LYPADELQRL ESLIYEGGDK QRGWRGEATG QKKDGTLFPQ
EISLTVLEDG GIVCVVRDIS ERQKSEGEIR KLNDSLCQQA LDLQATNREL EAFSYSLSHD
LRAPLTGLYG AAQALAEICS DKMDDTGLTL LNAIRQGCEN MEELIEAMLV LFKVSRTELS
YAEVDLSALA NAIMAELRLR NPERAVEWRF VEGIVAWCDP HLARILLENL IGNAWKYTAR
HDHPRIEFGQ KSSDGAVQFF VRDNGVGFDM RDAQRIFKPF QRLHRSGDFP GTGIGLATVQ
RIIDRHAGRV WADGAVGLGA TFFFTFPLPD KE
|
|---|
| |