| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_1061 |
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| Symbol | rpoB |
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| ID | 5163414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter uraniireducens Rf4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009483 |
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| Strand | + |
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| Start bp | 1260357 |
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| End bp | 1264469 |
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| Gene Length | 4113 bp |
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| Protein Length | 1370 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640548562 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001229840 |
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| Protein GI | 148263134 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.449101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTATT CAATTGCGAA TAACCCACTG TTGCGCAAGA ACTTCGCCAA AATCAAGAAG
ATTATTGAAA TTCCAAACCT GATAGACATT CAGAAAAATT CCTATAAAAG ATTCCTCCAG
CTAGACGTTC CCGCAGAAGC AAGAAAATAT TCCGGCCTTG AAGCCGTGTT CAAAAGCGTT
TTTCCCATAA AGGATTTTAG CGAAACCGCT TCTCTCGAAT ATGTTTCGTA TTCTCTAGGT
ATACCCAAAT ATGACGTTGA AGAATGTCAT CAGAGGGGTA TGACATTTGC CGCGCCGATG
AAGGTTAAGG TTCGGCTTGT CGTCTGGGAC GTGAACAAGG AGCCCAGTAC CCGCTCCATT
CGTGACATTA AGGAGCAGGA AGTATATTTT GGCGAAATCC CGCTCATGAC TGAGAACGGG
ACCTTTATCA TCAACGGTAC TGAACGTGTT ATTGTCAGTC AGTTGCATCG TTCACCGGGG
GTATTTTACG ATCACGATAA AGGTAAAACC CATTCCAGCG GCAAAGTGCT TTACTCCGCC
AGAGTAATCC CTTATCGGGG CTCGTGGTTG GATTTTGAAT TTGATCATAA AGATATTCTT
TATGTGCGTA TAGACCGGCG GCGCAAGATG CCCGCGACGG TGTTGCTGAA GGCACTCGGC
TATTCAACGG ATAAGCTGCT CAACTTTTTC TACAAGAGTG AGGAGATATT CTTCGAAGGC
GACAAGTTGA TGAAGATCGC CGATCCGGAA CTTCTGACAA ACCAGAAGGC GGTCGTCGAT
ATTGTCGATC CGAATACTGG CGAGGTTCTC GTCAAGGCCA ATAGAAAATT CACCAAGGCA
GCTATCAGAA AGATGGCTGA GCATGGTATC AAATATATTC CTATTACCAT TGAAGAAGTT
CTGGGCAAGG TTGCTTCGCA CGATATTGTA GACCCTGCAA CCGGCGAGGT GCTTGCCGAA
TGTAATGAAG AACTCACTCA GGTAAAGATC GATGAAATTA AAGGGCGAGG CATCGCTACC
TTTAAGGTGC TTTTTATCGA CAATCTGCAC GTAACCTCTT CGCTGCGCGA TACGATTCTT
ATTGATAAAA TCGGTTCCAC AGACGATGCT CTCATAGAAA TTTATCGAAG GCTCCGCCCC
GGCGATCCGC CTACCCTGAA GAGTGCGCTG GCGTTGTTTG AAAATCTTTT CTTTAATCCC
GAGCGATACG ACCTGTCAGC AGTCGGCCGG CTCAAACTGA ATTACAAGCT TGGTTTGCAG
ATACCATTGG ACTGCATGAC CCTTACCAGG GAAGATGTCC TGGAAGTGGT CCGTTATCTG
ATCGATCTGA AAAACGGCAA GGGAAGCATC GACGACATCG ACCATCTCGG CAATCGCCGT
GTGCGGGCTG TCGGCGAACT GCTGGAGAAC CAGTACCGTA TCGGTCTGGT GCGGATGGAG
CGGGCTATCA AGGAGAGGAT GAGCTTGCAG GAGGTTGAAA ACCTCATGCC GCACGATCTT
ATCAATTCCA AACCCGTCTC TGCGGTGGTG AAAGAGTTCT TCGGTTCTTC ACAACTTTCA
CAGTTTATGG ACCAGACTAA CCCCCTGTCA GAGGTTACAC ACAAGCGCCG TCTTTCTGCA
CTGGGACCTG GCGGCTTGAC ACGTGAGCGC GCCGGTTTCG AGGTGCGTGA CGTTCATCCG
ACACATTACG GCCGTGTCTG CCCGATTGAA ACTCCTGAAG GACCGAATAT CGGTTTGATA
GCATCTCTTT CCACCTATGC CCGGATTAAC GAGCACGGTT TTGTCGAAAC GCCATACCGT
CTGGTTAAAG AAGGGAAAGT TACCACGGAA GTCCGGTTTT TTTCTGCGCT GGAGGAAGAA
GGGCACGCTA TCGCCCAGGC CAATGCCGAA GTTGATAGTG ATGGACGTTT TGTCGCTGAC
TACATTTCTG CCCGCAAAAG CGGAGAATTT GTTCTGGTCG GCAGGGATGA ACTGGAGTTG
ATGGACGTTG CACCTATGCA GCTGGTTTCG GTTGCCGCCT CCCTGATCCC GTTTCTGGAA
AACGACGACG CAAACCGCGC GCTCATGGGC TCCAACATGC AACGTCAGGC CGTGCCTCTG
CTCAGGGCGG ATTCGCCGCT GGTCGGCACC GGTATGGAGC GGGTCGTAGC AAGGGATTCC
GGTGTGTCCG TAGTTGCCAG GCATAATGGC GTGGTTGAAT CGGTAGACGC CTCGCGTATC
GTCGTTAAGA TCGATGAGGA CGAATACGAC GAAACTGGTA CCGGTGTCGA TATTTACAAC
CTGATCAAGT TTGCCCGTTC CAATCAGAAT ACCTGCATCA ACCAACGACC TGTTGTTAAG
ATTGGCGACC ATGTCAAGCG CAGCGACGTA ATAGCTGATG GTCCTTCCAC AGATATGGGC
GAGCTGGCAC TTGGTCAGAA TGTGCTCGTT GCCTTCATGC CTTGGGGGGG CTACAACTTC
GAGGACTCCA TTCTTATCTC CGAAAGGCTG GTTAAGGATG ACCGTTACAC CTCCATTCAT
ATAGAAGAGT TTGAATGTGT GGCACGCGAT ACCAAGCTGG GAAAAGAAGA AATAACGGCC
GATATCCCCA ACCTGGGTGA AGAAACCCTG AAGGACTTGG ACGAATCAGG CATCATCCGT
ATCGGTGCCG AAGTAAGGCC AGGTGATATT CTGATTGGAA AGATCACCCC GAAAGGAGAA
ACCCAACTTT CTCCTGAGGA AAAACTGTTG CGTGCCATCT TTGGCGAAAA AGCTGGTGAT
GTACGTGATA CGTCCCTGCG GGTACCGCCC GGTGTTGAGG GGACGGTGAT CGGCGCCAAG
ATATTCTCGC GCAAAGGTGC GGATAAGGAT GCCCGTACCG AGCTTATTGA GAAGGCTGAG
GAACAGAAGC TGCGCAAGGA TGAGCAGGAC GAGATTCGCA TTATCCGTGA ATCTGCCGTC
GGCAAACTGA AAAAACTGCT CGTGGGTAAA ACTGCGGCAG TTAAGTTCGA AGGTAAAGAC
GGCAAGGTCC TTATCGTCAA AGGGAAGGCA ATCACCGAAG AGGCATTGCT TTCGGTCCCC
GTTGACCGTT GGGACGAAAT TTCCATTGCC GACGATGATA CCGTAGATGA GAAGGTAGCG
CAAATACTGG GAACCCTGAA CCAGCAGATC GACATAATTA AATATGTTTT TGACGATAAG
ATTCAGAAGT TAAAGCGTGG CGACGATCTT CCTCCTGGTG TCATCAAGAT GGTGAAGGTT
TATATCGCCA TCAAACGCAA ATTACAGGTT GGTGATAAGA TGGCCGGCCG ACACGGGAAC
AAGGGGGTTG TCTCCCGCAT CCTGCCGGAA GAGGACATGC CTTACCTGGA AGACGGCAGG
CCGGTGGAGA TAGTATTGAA CCCACTTGGT GTTCCTTCCC GTATGAACGT TGGTCAGATC
CTCGAGACGC ATCTAGGTTG GGCGGCCAAG GGGATCGGCT GGCAGATAGA GGACATGCTG
GAGAAGAACT CTCCACAGAA CCAGATAAAG ACCTATCTAA AAGAGGTGTA TGGCAACAAG
GAAATGAACA AGTTCCTTGA TTCCCTCGAA GAAGAAGAAT TGAACAACGT CGCCAAACGC
CTTAAGCGTG GTGTCCCTAT GGCGTCACCT GTTTTTGAAG GGGCATCTGA ACAAGGCATT
CAGGAGATGC TCGGCAAGGC CGGCTTTGAG TATACCGGTC AGGTCACTCT TTATGACGGC
AAGTCCGGTG TAGCGTTCAA ACACAAGGTT ACAGTCGGCA TTATGTATGT GTTGAAACTG
CATCACCTGG TTGATGATAA AATCCATGCC CGTTCTATCG GGCCTTACAG CCTGGTTACC
CAACAGCCGC TGGGTGGCAA GGCGCAGTTC GGTGGTCAGC GTTTAGGTGA GATGGAGGTC
TGGGCCATGG AAGCTTATGG CGCGGCTTAT GCCCTCCAGG AGTTCCTCAC CGTTAAGTCC
GATGACGTGG CGGGCCGCAC CAGGATGTAC GAGGCCATTG TGAAAGGAAA ACACACCCTT
GAGCCTGGTC TCCCCGAATC GTTCAACGTA CTGATTAAGG AGCTGCAGTC CCTGGGGCTG
GATGTAGAAC TTTTGGAAAA CGAGGAAGAG TAA
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| Protein sequence | MAYSIANNPL LRKNFAKIKK IIEIPNLIDI QKNSYKRFLQ LDVPAEARKY SGLEAVFKSV
FPIKDFSETA SLEYVSYSLG IPKYDVEECH QRGMTFAAPM KVKVRLVVWD VNKEPSTRSI
RDIKEQEVYF GEIPLMTENG TFIINGTERV IVSQLHRSPG VFYDHDKGKT HSSGKVLYSA
RVIPYRGSWL DFEFDHKDIL YVRIDRRRKM PATVLLKALG YSTDKLLNFF YKSEEIFFEG
DKLMKIADPE LLTNQKAVVD IVDPNTGEVL VKANRKFTKA AIRKMAEHGI KYIPITIEEV
LGKVASHDIV DPATGEVLAE CNEELTQVKI DEIKGRGIAT FKVLFIDNLH VTSSLRDTIL
IDKIGSTDDA LIEIYRRLRP GDPPTLKSAL ALFENLFFNP ERYDLSAVGR LKLNYKLGLQ
IPLDCMTLTR EDVLEVVRYL IDLKNGKGSI DDIDHLGNRR VRAVGELLEN QYRIGLVRME
RAIKERMSLQ EVENLMPHDL INSKPVSAVV KEFFGSSQLS QFMDQTNPLS EVTHKRRLSA
LGPGGLTRER AGFEVRDVHP THYGRVCPIE TPEGPNIGLI ASLSTYARIN EHGFVETPYR
LVKEGKVTTE VRFFSALEEE GHAIAQANAE VDSDGRFVAD YISARKSGEF VLVGRDELEL
MDVAPMQLVS VAASLIPFLE NDDANRALMG SNMQRQAVPL LRADSPLVGT GMERVVARDS
GVSVVARHNG VVESVDASRI VVKIDEDEYD ETGTGVDIYN LIKFARSNQN TCINQRPVVK
IGDHVKRSDV IADGPSTDMG ELALGQNVLV AFMPWGGYNF EDSILISERL VKDDRYTSIH
IEEFECVARD TKLGKEEITA DIPNLGEETL KDLDESGIIR IGAEVRPGDI LIGKITPKGE
TQLSPEEKLL RAIFGEKAGD VRDTSLRVPP GVEGTVIGAK IFSRKGADKD ARTELIEKAE
EQKLRKDEQD EIRIIRESAV GKLKKLLVGK TAAVKFEGKD GKVLIVKGKA ITEEALLSVP
VDRWDEISIA DDDTVDEKVA QILGTLNQQI DIIKYVFDDK IQKLKRGDDL PPGVIKMVKV
YIAIKRKLQV GDKMAGRHGN KGVVSRILPE EDMPYLEDGR PVEIVLNPLG VPSRMNVGQI
LETHLGWAAK GIGWQIEDML EKNSPQNQIK TYLKEVYGNK EMNKFLDSLE EEELNNVAKR
LKRGVPMASP VFEGASEQGI QEMLGKAGFE YTGQVTLYDG KSGVAFKHKV TVGIMYVLKL
HHLVDDKIHA RSIGPYSLVT QQPLGGKAQF GGQRLGEMEV WAMEAYGAAY ALQEFLTVKS
DDVAGRTRMY EAIVKGKHTL EPGLPESFNV LIKELQSLGL DVELLENEEE
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