| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_0344 |
|---|
| Symbol | |
|---|
| ID | 5166216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | + |
|---|
| Start bp | 404514 |
|---|
| End bp | 406706 |
|---|
| Gene Length | 2193 bp |
|---|
| Protein Length | 730 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640547848 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001229133 |
|---|
| Protein GI | 148262427 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0059666 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAC TTATTGAAAT ACTCGTGCAA TTCGGCGGCG ACAAGGGGGG AGGGCCGGGC
AATGTGGCCG TCCGCTTCCT GTTGCCGACA TTTTTCTGGT GCGCCCTTAC GGGGGTGGCG
TTCAGACAAT GGCGCAGGAC CAGCGAAAAT AAAGACCTCT ATGTGGGGAT CGCCGCGAGC
ATGGGGATGG CGCGGGAACT TCTGATGTTC ACCGCCGAGT ACGGCGCCTG GCGCAATATG
GTGCCGTTCG AATTCATGTA CAATTACTAC CCGCCGTTGG AACACGCCGC GACCATGCTG
TCATGCATCT TCATCGGTTA CGCCTTTCTC AACTACCAGC TCAAATGCCG GAGGTTCTCG
CGCCTCTTCG TCGTCGGCGC CACGACCATC ACCCTCATGC TCTACGTGGT AACGGCCGTT
GCATGGCATG ACTTTCAGGC CCGTAATGCC GGCGCCCCAT TCGGCACATT CTGGGGCGAT
ATGGTTTTCA GGACCACTGC CTCCGTCTTC ATGGGACTGG TGCTCGGTAC CTTCATCCAT
GCCGCCGCCC GGGGCAAGAA GGTTTCCACG GCACTGATGT GCGGTTTCAC ATTCCTGTTC
CTCGACGAAT TCCTGATGAT CATCAACCTC CTCAGTAATG AGCGCCACAT CGACATCTAC
GCTCCCATCA GGCATAACCT GCACATCTGG GCCATCCCGC AGTTTCTGTG GACCTACTGG
GCCGATCTCA GCAAGCGGAT GTGCGAAGCC GAACAGGTGA TCAAAAGCGT TTTCAATCTC
AGCCCCGGCA TGCTCTGTCT CATCGATTTC GAGGGTGCGT TCCGGGTCGT GAGCCCGGCA
TCGAGCCAGG TGCTCGGCAT CCCTCCCGAA GAGCTCACCG GACGCCGGTT GACGGAGTTC
GGATTTGAAG TGCGACGGGA CGGCAACCTG TCGTTCGTGT CCGAAGACGG CATTATGGAA
CCGCTCCAGT TCGAGAAGAA ATATCTTCCG GCGAACGGTC CCGGCCGCTG GCTGCATTGG
AACCTCCAGC CGGTTGCAAA GGAGAATATC TTCTATGCGG TGGTTTCCGA CGTCACCGAG
CAAAAGGCGC TCGCCGAGGA GCTTTTGGAG GAGAGGAACA AGCTGGATGC GATTATTTCC
TGCCTGGGGG ACGGCCTGAG CATCCAGGAT ACCGACTACC GGATCGTCTA CCAGAACCAG
ATCCATAAAA ATATGCTCGG TGACCACGTC GGCGAATATT GTTACCGGGG CTACGGGAGT
GATGCCCGGG TCTGCCCGGA TTGCCCGGTT GCCGATGCGT TCCTGGACTT GCAGGTGCAC
CACGCGGTAC GGACGGTCAA GCAGGGCGAT GATGCGAAAT ACGTTGAAAT CGCCGCCTCG
CCGCTTAAAG ACGGGAGCGG GGCCGTCATT GGGGCGATCG AGCTGGTGCG GGACATTACC
GCGCGCAAGG AAGCGGAAGA AGAAATCCGC AGGCTGAACA GCGACCTGGA ACGGCGGGTG
ACGGAGCGAA CCGCGCGGCT CACCGAGGCT TGCAGGGAGC TGGAATCATT CAGCTTCTCC
GTTTCCCATG ACCTGCGCTC CCCGCTGCGG AGTATTTGCG GCTACAGCGA GCAGTTGCTG
GAAGACTACG GCGAGAACCT TGACGACCAA GGGCGGCTTT ACGTGGAAAA TATCCTCAAT
GGGGGGCGGC GCATGGCGCA GATCATCGAG GCCATGCTCG ACTTTTCCAC CATAAGCCGC
AACGAGCTGC ACAGGGAAAA CGTCGACTTG AGCGAGCTTG CCGTCGTGGT GATGGCCGAA
CTCCGGCTCA GCGACCCCGA ACGCATGGTC TCTTTCACCA TCTCGAAGGG GCTGGTGGTC
AACGGCGATG CAAGGTTATT AAGGTCGGTG ATGGAGAACC TGTTCGGCAA CGCCTGGAAG
TACAGCGGAA ACGTGCCGCA CTCCTGCATC GAATTCGGCA AAATGGAGGA AGGGGGCGCA
TCCGTCTTTT TTGTCCGCGA CAACGGAGCC GGCTTCGACA TGGCGCACTC CGGCAAGCTT
TTTGCCCCGT TCCAGCGACT GCACCTTGAA CGGGAATTCC CGGGAAATGG CATCGGGCTC
GCCACCGTGC AGCGGATCAT TCAGAGGCAT GGCGGGCGAA TCTGGGCGGA AAGCGCGCCG
GCCAGGGGAG CGACGTTTTA CTTCACCCTA TGA
|
|---|
| Protein sequence | MNELIEILVQ FGGDKGGGPG NVAVRFLLPT FFWCALTGVA FRQWRRTSEN KDLYVGIAAS
MGMARELLMF TAEYGAWRNM VPFEFMYNYY PPLEHAATML SCIFIGYAFL NYQLKCRRFS
RLFVVGATTI TLMLYVVTAV AWHDFQARNA GAPFGTFWGD MVFRTTASVF MGLVLGTFIH
AAARGKKVST ALMCGFTFLF LDEFLMIINL LSNERHIDIY APIRHNLHIW AIPQFLWTYW
ADLSKRMCEA EQVIKSVFNL SPGMLCLIDF EGAFRVVSPA SSQVLGIPPE ELTGRRLTEF
GFEVRRDGNL SFVSEDGIME PLQFEKKYLP ANGPGRWLHW NLQPVAKENI FYAVVSDVTE
QKALAEELLE ERNKLDAIIS CLGDGLSIQD TDYRIVYQNQ IHKNMLGDHV GEYCYRGYGS
DARVCPDCPV ADAFLDLQVH HAVRTVKQGD DAKYVEIAAS PLKDGSGAVI GAIELVRDIT
ARKEAEEEIR RLNSDLERRV TERTARLTEA CRELESFSFS VSHDLRSPLR SICGYSEQLL
EDYGENLDDQ GRLYVENILN GGRRMAQIIE AMLDFSTISR NELHRENVDL SELAVVVMAE
LRLSDPERMV SFTISKGLVV NGDARLLRSV MENLFGNAWK YSGNVPHSCI EFGKMEEGGA
SVFFVRDNGA GFDMAHSGKL FAPFQRLHLE REFPGNGIGL ATVQRIIQRH GGRIWAESAP
ARGATFYFTL
|
|---|
| |