| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gobs_3504 |
|---|
| Symbol | |
|---|
| ID | 8755188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geodermatophilus obscurus DSM 43160 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013757 |
|---|
| Strand | + |
|---|
| Start bp | 3687460 |
|---|
| End bp | 3690273 |
|---|
| Gene Length | 2814 bp |
|---|
| Protein Length | 937 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | 2-oxo-acid dehydrogenase E1 subunit, homodimeric type |
|---|
| Protein accession | YP_003410467 |
|---|
| Protein GI | 284991913 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.526288 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCTC CGCAGCAGCC GGGCGGCGAC ACCGCCCGCG ACGCCGGCAA CGAGACCGGA
CGGGCCCGCG CGGTCATCAC CGACGGGCTC CCCAGCCAAC TGGTCGACAC CGACCCCGAC
GAGACCAACG AGTGGCTGGA GTCGCTGGAC GCCGTCGTCG ACCACGCCGG TCGCGGCCGC
GCCCGCTACC TCATGCTCCG CATGCTGGAG CGCAGTCGCC AGCAGCAGGT CGGCGTCCCC
GCCCTGCGCA GCACCGACTA CATCAACACC ATCCCGCCGG AGCGGGAGCC GTGGTTCCCG
GGCGACGAGG ACGTGGAGCG CCGGATCCGC GCCTACATCC GCTGGAACGC CGCGATCATG
GTGCACCGCG CGCAGCGCCC GGGGGTCGGC GTCGGCGGGC ACATCTCCTC CTACGCGAGC
TCCGCGTCCC TGTACGAGGT CGGCTTCAAC CACTTCTTCC GCGGCAAGGA TCACCCCGGC
GGCGGCGACC AGATCTGGTT CCAAGGGCAC GCCTCCCCCG GCATCTACGC CCGCGCCTTC
CTCGAGGGCC GCCTCGACGA GAACCAGCTC GACGGCTTCC GGCAGGAGGT GAGCCACCCC
GGCGGTGGGC TGTCGTCCTA CCCGCACCCG CGGCTGATGC CGGACTTCTG GGAGTTCCCC
ACCGTCTCCA TGGGCCTGGG CCCGATGAAC GCGGTCTACC AGGCACGGTT CAACCGCTAC
CTGCACGCCC GCGGCATCAA GGACACCTCC GACCAGCACG TCTGGGCCTT CCTGGGCGAC
GGCGAGATGG ACGAGCCCGA GTCGCTGGGC GTGATCGGCC TCGCCGCCCG CGAGGAGCTC
GACAACCTCA CCTTCGTCAT CAACTGCAAC CTGCAGCGGC TCGACGGCCC GGTGCGCGGC
AACGGCAAGG TCATCCAGGA GCTGGAGTCC TTCTTCCGCG GCGCCGGGTG GAACGTCGTC
AAGGTGATCT GGGGCCGGGA GTGGGACCCG CTGCTGGCCG CCGACCGCGA CGGCGCGCTG
GTCAACCTCA TGAACCAGAC GCCGGACGGC GACTACCAGA CCTACAAGGC CGAGGACGGC
GCCTTCGTCC GCGAGCACTT CTTCGGCCGG GACCCCCGCA CCCGCAAGCT CGTGGAGAAC
ATGAGCGACC AGGAGGTCTG GAACCTCTCC CGCGGCGGGC ACGACTACCG CAAGGTCTAC
GCGGCGTTCA AGGCGGCGGT GGAACACAAG GGGCAGCCCA CGGTCATCCT CGCCAAGACC
ATCAAGGGCT GGACCCTCGG CAGCCACTTC GAGGGCCGCA ACTCCACCCA CCAGATGAAG
AAGCTGACCG CGGAGGACCT CGCCGGGTTC CGCGACAGGC TCTACCTGCC GATCCCCGAC
GAGCAGCTCG ACAAGACGCT GCCGCCGTAC TACAAGCCGG ACCCGGACTC CGACGAGATG
CAGTACATGC TGGAGCGGCG CCGGCAGCTG GGCGGCGCGG TGCCCCGGCG CCGGGCGGAG
TTCAAGACGC TCAAGGCGCC CGAGGACAAG GCGTTCGACG TCCTGCGGCG CGGCTCCGGC
AAGCAGGAGG TGGCGACGAC GATGGCGTTC GTCCGCCTGC TCAAGGAGCT GCTCAAGGAC
AAGGAGCTCG GCCCGCGGTT CGTGCCGATC ATCCCCGACG AGGCCCGCAC ATTCGGGTTG
GACTCGCTGT TCCCGACCCA GAAGATCTAC AACCCGGCCG GCCAGCGCTA CACCTCGGTC
GACCGCGAGC TCATGCTGGC CTACAAGGAG TCCGAGCAGG GCGTAATCCT GCACGAGGGC
ATCAACGAGG CCGGCTCCAC GGCGTCGTTC ACCGCCGTGG GGACGTCGTA CTCGACGCAC
GGCGAGCCGA TGGTCCCGAT CTACATCTTC TACTCGATGT TCGGGTTCCA GCGGACCGGC
GACTCCTTCT GGGCAGCCGC CGACCAGATG ACCCGCGGCT TCGTCCTCGG CGCCACCGCC
GGCCGGACGA CGCTCAATGG CGAGGGCCTC CAGCACGAGG ACGGCCACTC GCTGCTGCTG
GCGCACACCA ACCCGGCCGT CGTCTGCTAC GACCCCGCGT TCTCCTACGA GGTCGGGCAC
ATCACCAAGG ACGCGCTGGC GCGCATGTAC GGCGACGACC CGGGCGCCCC GCTGGGCGGG
TCCCGCTCGC CCGACGTCAT GTACTACCTG ACGGTCTACA ACGAGCCGTA CAACCAGCCT
GCCGAGCCCG AGGGTCTGGA CCTCCAGGGC CTGCTCGCGG GCATGTACCG CTACGCGGAG
GGCCAGGGCG ACGGCCACAA GGCCCAGGTG CTCGCCTCCG GCGTCGCGGT GCCGTGGGCG
CTGCGCGCGC AGGAGCTGCT GGCGAACGAC TGGGGCGTGT CGGCCGACGT GTGGTCGGTG
ACGTCGTGGA ACGAGCTGCG GCGGCAGGCC GACGCGGCCG AGGAGCACAA CCTGCTGCAC
CCGGAGGACG AGCCGCAGGT CCCGTACGTG ACCCAGCGGC TGCAGGACGC CCCCGGGCCC
GTCGTGGCGG TGTCGGACTG GATGCGTGCG GTGCCCGACC TCATCGCGCC GTACGTCCCC
GGCGGGATGG CGACGCTGGG CACCGACGGG TTCGGCCTCT CCGACACCCG TCCGGCGCTG
CGGCGGCACT TCCACGTCGA CGCCGAGTCG ATCGTCGTCC GGGTGCTGGC CTCACTGGCC
GACCGTGGCG AGGTCGAGCG CGACGTCGTC CGCCAGGCGG TGGAGAAGTA CCAGATCCGT
GACGTGCAGG CCGCCCCCGC GGAGGAGCGG TCGGACCCGA GCCCGGCCAC CTGA
|
|---|
| Protein sequence | MSAPQQPGGD TARDAGNETG RARAVITDGL PSQLVDTDPD ETNEWLESLD AVVDHAGRGR
ARYLMLRMLE RSRQQQVGVP ALRSTDYINT IPPEREPWFP GDEDVERRIR AYIRWNAAIM
VHRAQRPGVG VGGHISSYAS SASLYEVGFN HFFRGKDHPG GGDQIWFQGH ASPGIYARAF
LEGRLDENQL DGFRQEVSHP GGGLSSYPHP RLMPDFWEFP TVSMGLGPMN AVYQARFNRY
LHARGIKDTS DQHVWAFLGD GEMDEPESLG VIGLAAREEL DNLTFVINCN LQRLDGPVRG
NGKVIQELES FFRGAGWNVV KVIWGREWDP LLAADRDGAL VNLMNQTPDG DYQTYKAEDG
AFVREHFFGR DPRTRKLVEN MSDQEVWNLS RGGHDYRKVY AAFKAAVEHK GQPTVILAKT
IKGWTLGSHF EGRNSTHQMK KLTAEDLAGF RDRLYLPIPD EQLDKTLPPY YKPDPDSDEM
QYMLERRRQL GGAVPRRRAE FKTLKAPEDK AFDVLRRGSG KQEVATTMAF VRLLKELLKD
KELGPRFVPI IPDEARTFGL DSLFPTQKIY NPAGQRYTSV DRELMLAYKE SEQGVILHEG
INEAGSTASF TAVGTSYSTH GEPMVPIYIF YSMFGFQRTG DSFWAAADQM TRGFVLGATA
GRTTLNGEGL QHEDGHSLLL AHTNPAVVCY DPAFSYEVGH ITKDALARMY GDDPGAPLGG
SRSPDVMYYL TVYNEPYNQP AEPEGLDLQG LLAGMYRYAE GQGDGHKAQV LASGVAVPWA
LRAQELLAND WGVSADVWSV TSWNELRRQA DAAEEHNLLH PEDEPQVPYV TQRLQDAPGP
VVAVSDWMRA VPDLIAPYVP GGMATLGTDG FGLSDTRPAL RRHFHVDAES IVVRVLASLA
DRGEVERDVV RQAVEKYQIR DVQAAPAEER SDPSPAT
|
|---|
| |