Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_3308 |
Symbol | |
ID | 3739399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 3722946 |
End bp | 3724592 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637780598 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_386246 |
Protein GI | 78224499 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 58 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 74 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACAC ATACCCCCGC TTCGCTGTTC CTTAAAGCAG ACTATTGCAG ATGCGGTATT GTCCTCCTCG ACGAATCAGG CCGCGTTACC GCCCTGAACC GGCAGTTTTT CGACACGACA GGCCTGGAGT TCAGAGAGGG TGATCTCCCT CCCGACGAGT TGCGGGGGCT GAAGAAAGGA GAGTGGATTT TCTGGGGGAG GAAGTGGTTC GTGCAAGCGG AGGGGCGGCA CGGGGTGGAG CTGCTGGCAA TCCGGCGCGT TCGGGCTGCG GACCATATAC TGGGGCCGTA CGGAGAGAAC TGCCTGAATG AAGAGATGGT GAAAATGGTC CTCGACAACC CCTACGAGGG ACTGACGGTC GTCGACGCTA CGGGGAAGGT CACCCTGCTC AGCCCGTCCA ACGAGCAGTG GCTGGGGCTG GAAGTCGGAG GGGGACGGGG CCTCGACCTG TCGGCCATTG CGCCGGCCAG CCATTTGTCG GAGGTGGCCC GCACCGGCGT GGCCGAACAC GCCCAGGTTG TCGACCTGCA CGGCAAGACC AAGGTCACGG TGAACCTTCC CATCCGGCGG GACAACAAGG TGATGGGCGC TTTCGGGAGA ATCCTCTTCA AGAGCACGGA ACAAGTGGAG AAGCTGGTGA CCAAGGTGCG GACCATGGAA CTCCAGGTGG AGCGTTTCGA GACCCTGCTG GATGAAATGC GGGGGAAACG CTACTCCTTC CGTAACATCC TCACCAAAAA CAAAGAAATG CTGATGCTCA TCGAACAGGC ACGACGCGTG GCCGACTCCG GCGCGACCGT GCTCATCCTG GGAGAAAGCG GGACTGGCAA GGAGTTGTTC GCCCAGGCGC TCCACGAAGC TTCGAGGAGG AACAAGGGGC CTTTCATTGC AGTAAACTGC GGCGCAATCC CCCGCGACCT GATCGAATCG GAACTGTTCG GCTACGAAGA AGGGGCCTTC AGCGGCGCCA GGAAAAAGGG GAAGCCCGGC AAGTTCGAAC TGGCGTGCGG CGGAACGCTC TTTCTGGATG AGATCGGTGA ACTCCCCCTC GAAAGTCAGG CAAAGCTGCT GCGGGTGCTT GAGGAGCGTA AGATAGACCG CCTGGGAGGC ACGGCGCCGC TCCCCGTCGA TTTTCGCCTG GTGGCCGCCA CGAACCGCGA TCTCATGACG AACGTCAACA AAGGGAGATT CCGCGCCGAT CTCTATTACC GCATCAACGA GTTCCCCCTC GAGATTCCCC CCCTCAGGTC CAGACCGGAA GACATCCCCC TGCTGGCGAA GCATTTTCTG ACGGAAGTGT CACGCCGGGA AGAACTGCCG ATGCTCAAGA TTTCCGCAGG AGCCACGGAG GCGTTGATAT CGCACGACTG GCCCGGCAAT GTACGGGAAC TGCGCGGGGT CATGCGTCAG ATGGCCTGGA AATCCCAGGG ATTAACCATA GAGCCCCACC ACCTGCCGCC GGCGCTCAAC AAGGGACAGA CCGTCGGGGT CTCCGGTACG CTGGAGGAAC AGACAGCCAG GACGGAGCGG GCCGCCATCG AATCGGCCCT GCAGGCTGCG GGTGGGAACC GGGCGCTGAC CGCACGCATG CTTGGAATCC ATCGCACCGC CTTATACAAA AAGATGCACC GACTGGGGAT GGAATAG
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Protein sequence | MDTHTPASLF LKADYCRCGI VLLDESGRVT ALNRQFFDTT GLEFREGDLP PDELRGLKKG EWIFWGRKWF VQAEGRHGVE LLAIRRVRAA DHILGPYGEN CLNEEMVKMV LDNPYEGLTV VDATGKVTLL SPSNEQWLGL EVGGGRGLDL SAIAPASHLS EVARTGVAEH AQVVDLHGKT KVTVNLPIRR DNKVMGAFGR ILFKSTEQVE KLVTKVRTME LQVERFETLL DEMRGKRYSF RNILTKNKEM LMLIEQARRV ADSGATVLIL GESGTGKELF AQALHEASRR NKGPFIAVNC GAIPRDLIES ELFGYEEGAF SGARKKGKPG KFELACGGTL FLDEIGELPL ESQAKLLRVL EERKIDRLGG TAPLPVDFRL VAATNRDLMT NVNKGRFRAD LYYRINEFPL EIPPLRSRPE DIPLLAKHFL TEVSRREELP MLKISAGATE ALISHDWPGN VRELRGVMRQ MAWKSQGLTI EPHHLPPALN KGQTVGVSGT LEEQTARTER AAIESALQAA GGNRALTARM LGIHRTALYK KMHRLGME
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