Gene Gmet_3308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGmet_3308 
Symbol 
ID3739399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter metallireducens GS-15 
KingdomBacteria 
Replicon accessionNC_007517 
Strand
Start bp3722946 
End bp3724592 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content61% 
IMG OID637780598 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_386246 
Protein GI78224499 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones58 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones74 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATACAC ATACCCCCGC TTCGCTGTTC CTTAAAGCAG ACTATTGCAG ATGCGGTATT 
GTCCTCCTCG ACGAATCAGG CCGCGTTACC GCCCTGAACC GGCAGTTTTT CGACACGACA
GGCCTGGAGT TCAGAGAGGG TGATCTCCCT CCCGACGAGT TGCGGGGGCT GAAGAAAGGA
GAGTGGATTT TCTGGGGGAG GAAGTGGTTC GTGCAAGCGG AGGGGCGGCA CGGGGTGGAG
CTGCTGGCAA TCCGGCGCGT TCGGGCTGCG GACCATATAC TGGGGCCGTA CGGAGAGAAC
TGCCTGAATG AAGAGATGGT GAAAATGGTC CTCGACAACC CCTACGAGGG ACTGACGGTC
GTCGACGCTA CGGGGAAGGT CACCCTGCTC AGCCCGTCCA ACGAGCAGTG GCTGGGGCTG
GAAGTCGGAG GGGGACGGGG CCTCGACCTG TCGGCCATTG CGCCGGCCAG CCATTTGTCG
GAGGTGGCCC GCACCGGCGT GGCCGAACAC GCCCAGGTTG TCGACCTGCA CGGCAAGACC
AAGGTCACGG TGAACCTTCC CATCCGGCGG GACAACAAGG TGATGGGCGC TTTCGGGAGA
ATCCTCTTCA AGAGCACGGA ACAAGTGGAG AAGCTGGTGA CCAAGGTGCG GACCATGGAA
CTCCAGGTGG AGCGTTTCGA GACCCTGCTG GATGAAATGC GGGGGAAACG CTACTCCTTC
CGTAACATCC TCACCAAAAA CAAAGAAATG CTGATGCTCA TCGAACAGGC ACGACGCGTG
GCCGACTCCG GCGCGACCGT GCTCATCCTG GGAGAAAGCG GGACTGGCAA GGAGTTGTTC
GCCCAGGCGC TCCACGAAGC TTCGAGGAGG AACAAGGGGC CTTTCATTGC AGTAAACTGC
GGCGCAATCC CCCGCGACCT GATCGAATCG GAACTGTTCG GCTACGAAGA AGGGGCCTTC
AGCGGCGCCA GGAAAAAGGG GAAGCCCGGC AAGTTCGAAC TGGCGTGCGG CGGAACGCTC
TTTCTGGATG AGATCGGTGA ACTCCCCCTC GAAAGTCAGG CAAAGCTGCT GCGGGTGCTT
GAGGAGCGTA AGATAGACCG CCTGGGAGGC ACGGCGCCGC TCCCCGTCGA TTTTCGCCTG
GTGGCCGCCA CGAACCGCGA TCTCATGACG AACGTCAACA AAGGGAGATT CCGCGCCGAT
CTCTATTACC GCATCAACGA GTTCCCCCTC GAGATTCCCC CCCTCAGGTC CAGACCGGAA
GACATCCCCC TGCTGGCGAA GCATTTTCTG ACGGAAGTGT CACGCCGGGA AGAACTGCCG
ATGCTCAAGA TTTCCGCAGG AGCCACGGAG GCGTTGATAT CGCACGACTG GCCCGGCAAT
GTACGGGAAC TGCGCGGGGT CATGCGTCAG ATGGCCTGGA AATCCCAGGG ATTAACCATA
GAGCCCCACC ACCTGCCGCC GGCGCTCAAC AAGGGACAGA CCGTCGGGGT CTCCGGTACG
CTGGAGGAAC AGACAGCCAG GACGGAGCGG GCCGCCATCG AATCGGCCCT GCAGGCTGCG
GGTGGGAACC GGGCGCTGAC CGCACGCATG CTTGGAATCC ATCGCACCGC CTTATACAAA
AAGATGCACC GACTGGGGAT GGAATAG
 
Protein sequence
MDTHTPASLF LKADYCRCGI VLLDESGRVT ALNRQFFDTT GLEFREGDLP PDELRGLKKG 
EWIFWGRKWF VQAEGRHGVE LLAIRRVRAA DHILGPYGEN CLNEEMVKMV LDNPYEGLTV
VDATGKVTLL SPSNEQWLGL EVGGGRGLDL SAIAPASHLS EVARTGVAEH AQVVDLHGKT
KVTVNLPIRR DNKVMGAFGR ILFKSTEQVE KLVTKVRTME LQVERFETLL DEMRGKRYSF
RNILTKNKEM LMLIEQARRV ADSGATVLIL GESGTGKELF AQALHEASRR NKGPFIAVNC
GAIPRDLIES ELFGYEEGAF SGARKKGKPG KFELACGGTL FLDEIGELPL ESQAKLLRVL
EERKIDRLGG TAPLPVDFRL VAATNRDLMT NVNKGRFRAD LYYRINEFPL EIPPLRSRPE
DIPLLAKHFL TEVSRREELP MLKISAGATE ALISHDWPGN VRELRGVMRQ MAWKSQGLTI
EPHHLPPALN KGQTVGVSGT LEEQTARTER AAIESALQAA GGNRALTARM LGIHRTALYK
KMHRLGME