| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2888 |
|---|
| Symbol | |
|---|
| ID | 3740799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 3268686 |
|---|
| End bp | 3270170 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637780179 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_385831 |
|---|
| Protein GI | 78224084 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 52 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.0315028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTGACC GCACGACTGA CAATCAGCAG CAGGAGTTTC AAGAGCTGAA GAAAAAATCG
CTTTCAGGGA TGACGGCGCT CTTTATCCGC CAGGTCCTGG TGAAGCTGAT TTTTTTCGGG
GGCAACATCG TCCTTGCCCG GCTCCTGGCG CCGCAGGTCT TTGGAATCTA CGCTATCGTC
AACTTCGTCG TCACCTTTTT CTCTACCTTT GGCGATGTGG GGATAGGCGC GGCTCTGATC
CAGAAGAAAG GAGAGTTGAG TCGGGAAGAG CTCTCCACTA CCTTCTGGCT GCAGCAGATG
CTGGTCTGGA GTGTGGTGGC GGTGGCGGTG CTGGCGGCGC CGTTGGCGCT GAGGGTCTAT
CCGACGCTTC CGCCGGTGGG GGTGTGGCTC ATTCGGGCTA TGGCGCTCAG CTTCTTCTTT
TCTTCGCTGA AAACAATCCC GGCAATCCTG ATGGAACGGG AGATCGACTT CAACCGGATT
GCCTGGGTAG ATATTACCGA GAACCTGGCA TTCCAAGGTG TAGCCATCAC TGGCGCCTTC
CTTGGCTGGG AGGCGTGGAG CTTTGTGGCG GCGGCGGTGA CGCGAGGGTT TCTTGGCGCG
CTGCTGATCT ACTCGCTGTC GTCGTGGCGG CCGAGCCTGC ACTACCGGTT CGAGTCGGTG
AAGGGGTTGG TGCGGTTCGG CCTGCCGTAC CAGGGGAACC AGATTCTCAG CTTCATCAAG
GATGCTGTGA CGCCATTGTT TGTCGGGGCG TATGCCGGGG CGGCGGCGGT GGGATACCTC
AACTGGGCGA GGAACTTTGC TTTCGTCCCT CTAGTTATCT CAGAAACCTT TGGCCGTGTG
GCCTTCCCGG CGTTTTCCCA ACTCCAAGAC GATCGGGAGC TTTTGGGGCA CACCATCGAG
AACTCGATCC GCATGATGAC CTTTGTCATG CTCCCTGTCA CCGGGATTTT TATCGCGCTT
GGGCCGGAGA TAACGCACTA TTTTTATACG GACAAATGGT TTCCCGCGAT CAACGCGTTC
TATCTCTTTT CGTGGGCGCC ACTGATGATG GGTGTCACCC TGCCGATGTT CAGCGGGATA
TTGAGCATCG GGAAATCAAA AATTATCCTA GCAATGAGCT TGGCGCTTAT CGGGATTGAG
TGGGGAATTG GCGCCCCGCT GGTGACACGA ATCGGGTTCA CCGGAGTCGC TGTTACCCAG
CCAATCTCCT ACATAATCTT TACAGTGGTT TACAAGCATG TGCTTCGCCG TCAGCGGGTC
AGGGTCAACG TCGTCAGGAA CGCGTACCTT AACCTACTTA TTGCTGCCTT GATGGCTGCA
ATTGTTTGGT ATGCGAAGGG GGGGCTTGTT ACATCTCTGC CGGCGCTGGT GGCCTTTGCT
GGGATGGGAC TTGTCGTGTA TCTCTTGTTA TCGTTCATGT TAAATCGGGG GACACTAAAG
GAGTCCCTCC GTTACTTTCG CAAACTGAGA GAGCCAACAT GCTAA
|
|---|
| Protein sequence | MTDRTTDNQQ QEFQELKKKS LSGMTALFIR QVLVKLIFFG GNIVLARLLA PQVFGIYAIV
NFVVTFFSTF GDVGIGAALI QKKGELSREE LSTTFWLQQM LVWSVVAVAV LAAPLALRVY
PTLPPVGVWL IRAMALSFFF SSLKTIPAIL MEREIDFNRI AWVDITENLA FQGVAITGAF
LGWEAWSFVA AAVTRGFLGA LLIYSLSSWR PSLHYRFESV KGLVRFGLPY QGNQILSFIK
DAVTPLFVGA YAGAAAVGYL NWARNFAFVP LVISETFGRV AFPAFSQLQD DRELLGHTIE
NSIRMMTFVM LPVTGIFIAL GPEITHYFYT DKWFPAINAF YLFSWAPLMM GVTLPMFSGI
LSIGKSKIIL AMSLALIGIE WGIGAPLVTR IGFTGVAVTQ PISYIIFTVV YKHVLRRQRV
RVNVVRNAYL NLLIAALMAA IVWYAKGGLV TSLPALVAFA GMGLVVYLLL SFMLNRGTLK
ESLRYFRKLR EPTC
|
|---|
| |