| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2820 |
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| Symbol | |
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| ID | 3741086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 3191839 |
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| End bp | 3193878 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637780105 |
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| Product | Terpene synthase:squalene cyclase |
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| Protein accession | YP_385763 |
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| Protein GI | 78224016 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000000869721 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.376933 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATTT CCAAGCATCC CATTTCACAC GCACTCACCT CCTTCAACGA AACAGCGAAA
GAGACAAAAG AGGAGCCGCA GAAGAAACGG GGGGGCAAGG TCCACCACCT CCCCGCCTCC
ATCTGGAAAA AGCGGGACGT GGAAACCACG AGCCCCCTCG ACCAGGCCAT CAAACGGAGC
CAGGAGTTCT TTTTGCGGGA GCAACTCCCC GCCGGGTACT GGTGGGCGGA GCTGGAGTCC
AACGTCACCA TCACCGCCGA GTACGTCATC CTCTTCCACT TCATGGGGCT GGTGAACCGG
GACAAAGATC GGAAGATGGC TACCTATCTC CTCTCCAAGC AGACCGAGGA GGGGTGCTGG
TGCATCTGGC ACGGAGGGCC GGGCGACCTC TCCACCACCA TCGAAGCATA CTTCGCCCTG
AAGCTGGCCG GCTACCCCGC CGACCATCCG GCCATGCAGA AGGCCCGCAC GTTCATTCTC
GGGAAAGGGG GCATCCTCAA GGCACGGGTC TTCACCAAGA TCTTCCTGGC CCTCTTCGGC
GAATTCTCCT GGCTGGGGGT CCCCTCCATG CCCATCGAGA TGATGCTCCT TCCCAACGGC
TTCACCTTCA ACCTCTATGA GTTCTCCAGC TGGTCCCGGG CGACCATTAT TCCGCTCTCC
ATCGTCATGG CCGAGCGGCC GGTGCGCAAG CTCCCCCCCT GGGCGAGGGT GCAGGAACTC
TACGTGCGGC CGCCGCGCCC CATGGACTAC ACCTTCACCA AGGAAGACGG GATCCTTACC
TGGAAGAACA TCTTCATCGG CATCGACCAT ATCCTCAAGG TCTATGAGGC GAGCCCCATC
CGCCCCGGCA TGAAGAAGGC CATGGCCATT GCCGAACAGT GGGTGCTGGA CCACCAGGAG
CCCACCGGCG ACTGGGGCGG CATCCAGCCG GCCATGCTCA ACTCGGTTCT GGCCCTCCAT
TGCCTCGGCT ACGCTAACGA CCACCCGGCC GTTGCCAAGG GGCTTCAGGC CCTGGCCAAC
TTCTGCATCG AGAGCGACGA CGAGATCGTC CTCCAATCCT GCATCTCGCC GGTATGGGAC
ACGGCCCTGG CCCTCATGGC CATGGTCGAC TCCGAAGTTC CCACCGATCA CCCGGCCCTG
GTGAAAGCCG CCCAGTGGCT CCTGGACCGG GAAGTCCGCA AGGTTGGCGA CTGGAAAATC
AAGGCCCCCA ACCTGGAGCC GGGGGGATGG GCCTTCGAGT TCCAGAACGA CTGGTACCCG
GACGTGGACG ACTCGGGGAT CGTCATGATG GCCATCAAGG ATGTGAAGGT GAAGGACTCG
AAGGCCAAGG CGGAGGCGAT CCAGCGCGGC ATTGCCTGGT GCATCGGCAT GCAGAGCAAG
AACGGCGGCT GGGGAGCCTT CGACAAGGAC AACACCAAGC ATATCCTCAA CAAGATTCCC
TTCGCCGACC TGGAGGCCCT CATCGACCCC CCCACGGCGG ATCTTACCGG CCGGATGCTG
GAGTTGATGG GAACCTTCGG CTACCCCAAG GACCACCCGG CCGCGGTGCG GGCGCTCCAG
TTCGTCAAGG AGAACCAGGA ACCGGACGGC CCCTGGTGGG GACGCTGGGG GGTCAACTAC
ATCTACGGCA CCTGGTCGGT GCTCTGCGGC CTCAAGGCCT ATGGCGAAGA CATGGGACAG
CCTTACGTCC GCAAGGCCGT TGAATGGCTC GCCGCCCACC AGAACCCCGA CGGCGGCTGG
GGTGAGTGCT GCGAATCCTA CTGCGATCAG AAGCTGGCCG GCACCGGCCC AAGCACCGCC
TCCCAGACGG GATGGGCACT CCTCTCCATG CTCGCCGCAG GCGACGTGGA CCACCCGGCC
GTGGCCCGGG GGATCCGGTA CCTGATCGAG ACCCAGCAAC CCGATGGGAC CTGGGACGAG
GACCAGTTCA CCGGAACCGG CTTCCCAAAA TACTTCATGA TCAAGTATCA TATCTACCGG
AACTGCTTTC CGCTCATGGC CATGGGACGC TACCGGGCGC TGAAGGGCCA CAAGGGATAA
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| Protein sequence | MKISKHPISH ALTSFNETAK ETKEEPQKKR GGKVHHLPAS IWKKRDVETT SPLDQAIKRS
QEFFLREQLP AGYWWAELES NVTITAEYVI LFHFMGLVNR DKDRKMATYL LSKQTEEGCW
CIWHGGPGDL STTIEAYFAL KLAGYPADHP AMQKARTFIL GKGGILKARV FTKIFLALFG
EFSWLGVPSM PIEMMLLPNG FTFNLYEFSS WSRATIIPLS IVMAERPVRK LPPWARVQEL
YVRPPRPMDY TFTKEDGILT WKNIFIGIDH ILKVYEASPI RPGMKKAMAI AEQWVLDHQE
PTGDWGGIQP AMLNSVLALH CLGYANDHPA VAKGLQALAN FCIESDDEIV LQSCISPVWD
TALALMAMVD SEVPTDHPAL VKAAQWLLDR EVRKVGDWKI KAPNLEPGGW AFEFQNDWYP
DVDDSGIVMM AIKDVKVKDS KAKAEAIQRG IAWCIGMQSK NGGWGAFDKD NTKHILNKIP
FADLEALIDP PTADLTGRML ELMGTFGYPK DHPAAVRALQ FVKENQEPDG PWWGRWGVNY
IYGTWSVLCG LKAYGEDMGQ PYVRKAVEWL AAHQNPDGGW GECCESYCDQ KLAGTGPSTA
SQTGWALLSM LAAGDVDHPA VARGIRYLIE TQQPDGTWDE DQFTGTGFPK YFMIKYHIYR
NCFPLMAMGR YRALKGHKG
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