Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_2556 |
Symbol | |
ID | 3738860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | - |
Start bp | 2901389 |
End bp | 2902888 |
Gene Length | 1500 bp |
Protein Length | 499 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637779842 |
Product | peptidoglycan-binding LysM:lytic transglycosylase, catalytic |
Protein accession | YP_385500 |
Protein GI | 78223753 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.000626959 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0000000459399 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAAAAAG CTCTTCTCCT CCTCGTTCTA TGTCTCTTTC CGGTTCTTCC CGCCCTGGCA TCGGAACCCC GTAACTCACC CCTCAAGGAA CTGGCCGCGC TGGGTAATTC CTCCTCGCTT CCCGACCTTT CGGGAGCCGT TCCCTCCGGG TTCGACTCTC GCCCCGGCCG CAGGTCCGGT TCCCTTGAGC CCTCCATGGG AGACCTGGTC GTCATCGAAG ACCAGGGAGC CGCCGAAAAC GACTTTGAAC TGAAGATTCC CGAGGGTCCG CTCCCCGACT CGGATATTCC GCTTACCCTC AACGGCCAGG TGGAGTACTT CATCCGCTAC TTCCAGTCAT CCGGCCGCAA GTCTTTTACC CGCTGGCTTT CCCGCTCCGA ACGCTATATT CCGATGATGA AGGAAGTCCT CAAGAAAAAC GGCCTTCCCG AGGATCTGGT CTACCTCGCC ATGATCGAGA GCGGCTTCAC CCCCCACGCG GTGTCGGTGG CTAGCGCCGT GGGGCCGTGG CAGTTCATCT CCGGCACCGG GAAACGCTAT GATCTGCGGA TAGACCAGTG GATCGACGAG CGGCGGGATC CCCTCAAGTC GACGGTGGCG GCGGCCCTGT ACCTGAAAGA GCTCTACGCC ATGTTCAACA ACGACTGGTA CCTGGCGGCA GCAGGGTACA ACGCGGGGGA GAACAAAATC CTGCGGGCCA TTGATCGGTA CAATACCCGC GACTTCTGGG AGATCTCCAA GGGTTCATAT CTGAAGCGGG AAACCAAGGA GTACGTGCCG AAACTCCTGG CCGCCGCCAT TATCGCCAAG GAACCGGCCC GTTATGGCTT TGCCGACGTT GCCTACCTTC CTCCCATCGA GTTCGACACG GTGACGATTC CCTCCCGCAC CGATCTGGAG GTGGCGGCGA AGCTCTGCAA TGTGGACTAT CAGGTCGTCA AGGAGCTGAA TCCTGAACTG CGCCGCTGGT GCACTCCCCC GGACTACCCC GGCTACGAGC TTAAGATTCC CGTTGGCAAG AAGAGGGCCT TTGAGCAGGC CTATGCGCAA CTTCCCGAAG GTCAGCGCTA CGCCGAGCGG GTTGTTTACA CCCGCTACCG GGCCAAGAAA AGGGATACCC TCGCGTCAAT CGCCAGCCGT TACGGCACCA CCCCCCAGGC CCTGGCCGAG GTGAACAAGC TGAAGCTCTC CGCCAAGGTG CGGGGGCGGA CCCTCCTTGT GCCGGTGGTT GCCGACAGGG AGCCGGCGGT CCAGACCGCG AAGGCCGATG TTTCGCGCAA GGAGAGCGCC AAGGGGTTCA ACAAGTACTA CACCGTGAAA AAGGGCGACA CGATTGCGTC GCTTTCAAAG AAATTCAATA TCTCGTCCCG CATTCTCACC GCCTGGAACA GCCTGAAGGG AAAACTTGCC CTTCGTCCCG GCAAGCGGAT CATCGTTGCC AAGTACGTGG AGAAGAAGGG TTCCATGGTT CCGGTGTCCG GCGGCGACGA CAACGGATAA
|
Protein sequence | MKKALLLLVL CLFPVLPALA SEPRNSPLKE LAALGNSSSL PDLSGAVPSG FDSRPGRRSG SLEPSMGDLV VIEDQGAAEN DFELKIPEGP LPDSDIPLTL NGQVEYFIRY FQSSGRKSFT RWLSRSERYI PMMKEVLKKN GLPEDLVYLA MIESGFTPHA VSVASAVGPW QFISGTGKRY DLRIDQWIDE RRDPLKSTVA AALYLKELYA MFNNDWYLAA AGYNAGENKI LRAIDRYNTR DFWEISKGSY LKRETKEYVP KLLAAAIIAK EPARYGFADV AYLPPIEFDT VTIPSRTDLE VAAKLCNVDY QVVKELNPEL RRWCTPPDYP GYELKIPVGK KRAFEQAYAQ LPEGQRYAER VVYTRYRAKK RDTLASIASR YGTTPQALAE VNKLKLSAKV RGRTLLVPVV ADREPAVQTA KADVSRKESA KGFNKYYTVK KGDTIASLSK KFNISSRILT AWNSLKGKLA LRPGKRIIVA KYVEKKGSMV PVSGGDDNG
|
| |