| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2223 |
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| Symbol | |
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| ID | 3740587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | - |
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| Start bp | 2513938 |
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| End bp | 2515608 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637779515 |
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| Product | NifA subfamily transcriptional regulator |
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| Protein accession | YP_385175 |
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| Protein GI | 78223428 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0251727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.000170906 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAGAAAC CTGGAGGAAG CGGAAACAGG GGGGGTGCGA CGCAGGGAGA GAGCAATCCT
CCGGTAGACT GTTCTTCTTG TGGTCCAAAC AGCAGCACGT TGGAAGAACG TCTGAGATTC
GAGATGCTTC TTTCGGAGAT ATCTTCAGTC TATTCCAATC TCCCTGTGGA AGAGGTGGAT
AAGACGATTG AGTCTGGTCT CCAGAGGCTT GGTGAATTTT TGGGGGCCGA CCGATGCAAC
CTGGTGCAAT TCTCCGAAGA CGGTTCCCGC GTCCTTGTTT TTCATTCGTG GATACACGAT
GACGCAAAGC CTGACCCCGG GTTTATCGCC CCCGATCATA ATCTTTTCCC CTGGTTTGCG
AAGATGTTTC ATCTTGGGAA GGTCGTACAG TTTTCCCATC TGGATGACCT GCCGGCGGAG
GCGGCGACTG ATATAACGGC ACTGCTGGCA TTGCGCATAA AGTCGCAGGT GTCGGTTCCG
ATCTCGGTAG GGGGGCATGT CTTCGGGACT CTTTCCCTTG CGACGGTCCG GAGCTACCGT
TCCTGGCCGG ATGAACTGGT GCCACGGTTG CGTCTTGTGG GGGAAATCTT TGCCAACGCC
CTGGTAAGGA AGCAGAAAGA ACTGCAGATT CGCAAAGCGT TTCAGCAGAT CAAGGAACTG
AACGAGGAAC TTGCGGCTGA CTGCACGTAT TTGCGGGAGG AGATCGATCT GAACTACGAT
GTGCATCATA TCATCGGCCA GAGTCTTCCC CTCAAACGGG TGTTGGCCAA GATCCAGCAG
ATTGCCCTTA CGGACACGAC CGTCCTCATA CTGGGGGAAA CCGGCACTGG CAAGGAACTG
GTTGCCCGGG CGATTCATGC GGCGAGCCAG CGTCGAGATC GGCCGATGGT TAAGGTGAAC
TGTGCCTCGC TTCCTGCAAA TCTTATAGAG AGCGAGTTGT TCGGCCACGA GAAGGGTGCG
TTTACCAGTG CCCAGGTGAG GCAGATCGGG CGTTTCGAGT TTGCCGACCG CAATACCCTC
TTTCTCGACG AGATCGGTGA ACTTCCTCTG GAATCCCAGG CGAAACTCCT CCGGGTGCTC
CAGGAAGGAG AGTTCGAGAG GTTGGGCAGT TCGCGCACGT TAAAGGTCGA TGTCCGTATC
GTTGCCGCCA CCAACAGGGA CCTGGAGGAA GAGGTCCGCA AGGGGCGTTT TCGTCAGGAT
CTGTGGTATC GCCTCAACAT CTTTCCCATC ACGGTTCCGC CGCTGCGTGA GCGTACGGAA
GATATCCCCC TGCTCATCAA TCTCTTCGTG AACAAATTCG GCCGGAAACT GGGGAAGAGT
ATTCGGCGCA TTCCCGCAGG TGTGATGAAG TCCTTACAGG CCTACGATTG GCCGGGGAAC
GTGCGGGAAC TGGAAAACGT CATCGAGCGT GCGGCGATCA ATACCGTCGG CCCATCCCTC
CAACTGCTCG ATAACCTGAA GAGTTCCTTG GTAACGGAAA AGACCGCAGC ACCACGGCTG
ACCCTGGAAG AAGCCGAACG GAGCCATATC CTGCAGGTGC TTGCGGATAC GAACGGCCGT
ATAGAGGGAC CCAAGGGGGC CGCATTGATA CTCGGTATCA ACCACTCGAC TCTTCGTGCC
AGGATGCGCA AGCTCGGCAT TCACATCCGA AGGATTTCAG ACGCCGATTG A
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| Protein sequence | MEKPGGSGNR GGATQGESNP PVDCSSCGPN SSTLEERLRF EMLLSEISSV YSNLPVEEVD
KTIESGLQRL GEFLGADRCN LVQFSEDGSR VLVFHSWIHD DAKPDPGFIA PDHNLFPWFA
KMFHLGKVVQ FSHLDDLPAE AATDITALLA LRIKSQVSVP ISVGGHVFGT LSLATVRSYR
SWPDELVPRL RLVGEIFANA LVRKQKELQI RKAFQQIKEL NEELAADCTY LREEIDLNYD
VHHIIGQSLP LKRVLAKIQQ IALTDTTVLI LGETGTGKEL VARAIHAASQ RRDRPMVKVN
CASLPANLIE SELFGHEKGA FTSAQVRQIG RFEFADRNTL FLDEIGELPL ESQAKLLRVL
QEGEFERLGS SRTLKVDVRI VAATNRDLEE EVRKGRFRQD LWYRLNIFPI TVPPLRERTE
DIPLLINLFV NKFGRKLGKS IRRIPAGVMK SLQAYDWPGN VRELENVIER AAINTVGPSL
QLLDNLKSSL VTEKTAAPRL TLEEAERSHI LQVLADTNGR IEGPKGAALI LGINHSTLRA
RMRKLGIHIR RISDAD
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