| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2029 |
|---|
| Symbol | |
|---|
| ID | 3740686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 2270200 |
|---|
| End bp | 2271756 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637779323 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_384983 |
|---|
| Protein GI | 78223236 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR03007] polysaccharide chain length determinant protein, PEP-CTERM locus subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.911023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.105361 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTATCAA AGACGGAAGA GTTGAATAAA TACCTGAAAA TGCTCATGAA GAGGAGGTAT
CTCTTTATTG TGGTATCTCT TGTGGTGATG TCTGTTATTG CCTGGGGAAG CTTTTTCCTC
CCCAAGAAAT ATGAGGCATC GAGCACGGTA TTCATCGAAA AGAGCGTCAT CAAGGATCTG
GTGAAGGGGA TCACCTTTAC CCCTTCTGTC GAGGACAAGG TTCGCATCCT GCGGTATGCC
ATGCTCAGCC GCACTTTCGT GACCAATGTT CTGAAATCAC TTGATGCTGA TACGAAGGTA
AAGAACGATA AAGAGATGGA AGGTCTTGTT GAAGACTTCC AGAAAAGGAC GCAAATAAGC
ATCAAGGGTA ATGACCTTTT TATCGTCAGC ATCCGGGACA AGGATCCGAA GCTCGCTACT
GACTACGTCA ACACGCTTGT CAGAAAGTAT GTGGAGGAAA ACGTCTCCAG CAAGCGGCAG
GATTCCTTTG GCGCTGATCG GTTCATCTCC GAGCAGCTAA AAACCTTCAA GGACAAGCTT
GACGAGTCCG AGAACAAGAT CGTTGCTTTT CGTCAGAAAC GGGGCGTGTC GGTGGGGATT
GACGAGGCGC TTCTCGTTAA TGACATTCGC CAATATCAGG GAGAACTCGA CTCAATGCGG
ATCAAACGGA ATGAGTTGAC CGCAACACGG GATGCTCTCA GGCGCCAGCT CAAGAGCATC
AAGCCCACCA CCGTCGCTCT CTCGTCCCGG GAGAACTCGA GCGAGGTTGA GATGCTCGAG
CGCAGGCTCA AACAGCTCTC TGCCAATTAC ACCGACAACT ATCCCGAGGT AATTCGCATC
AAGAGTATCA TCGCATCGCT CAAGAAAAAG CAGGAGCCGG GCCATCAGGC TGATACAGGG
GCGAAAGAGG AATTCAGCAC GGCCAACCCC GTGTACCAGA ATCTCGAGCA GCAGTTGTAC
CAGGTTGAGG CAGAACTTGA GGCGGTCAAC GCCAAACAGC GCCAGCTCCA TGCAACCATA
GGCGGCAAGG AACATGAACT TCGAAACGTT CCGGCTGACC AGAAGACACT GACTGACCTC
ATCAAGGAGC GCGACGCCAA TCGGCAGTTG TACGAGCAGC TTCTCACCCG GCAGGGACAG
GCTCAACTCA CGAAGGAGAT GGAGGTAGAG GACAAGGCCA CGACGTTCAG GGTTGTGGAC
CCGGCCATCG TGCCGATGAA ACCGGTCAGC CCCGACCGGG TCAAGATGAT CATTATGGGC
ATCATCATGG GATTCGTTGC CGGCGCCGCC TCAGTCTTTG TCATGGAGAT GTTCGACTCC
TCCGTCAAGG ATGTCACCTC TCTCAAGAAG CTTGGTTTTG AGGTGCTCGC AGTAATCCCG
ACCATTTTCA ACCAGGAAGA AGCAAGCAAG GTAGCGAAGA AAGATCGAAA GATATATCTG
GTCGCGGGCT GTTACTTCGC TCTCATCTGC TTGATGCTTA CCCATGAATT GCTGGGATTG
ACTCTGATCG AGAAGGTCCT CACCAAACTG GGGCTTGATC AGTTCATCAT GAGCTGA
|
|---|
| Protein sequence | MVSKTEELNK YLKMLMKRRY LFIVVSLVVM SVIAWGSFFL PKKYEASSTV FIEKSVIKDL
VKGITFTPSV EDKVRILRYA MLSRTFVTNV LKSLDADTKV KNDKEMEGLV EDFQKRTQIS
IKGNDLFIVS IRDKDPKLAT DYVNTLVRKY VEENVSSKRQ DSFGADRFIS EQLKTFKDKL
DESENKIVAF RQKRGVSVGI DEALLVNDIR QYQGELDSMR IKRNELTATR DALRRQLKSI
KPTTVALSSR ENSSEVEMLE RRLKQLSANY TDNYPEVIRI KSIIASLKKK QEPGHQADTG
AKEEFSTANP VYQNLEQQLY QVEAELEAVN AKQRQLHATI GGKEHELRNV PADQKTLTDL
IKERDANRQL YEQLLTRQGQ AQLTKEMEVE DKATTFRVVD PAIVPMKPVS PDRVKMIIMG
IIMGFVAGAA SVFVMEMFDS SVKDVTSLKK LGFEVLAVIP TIFNQEEASK VAKKDRKIYL
VAGCYFALIC LMLTHELLGL TLIEKVLTKL GLDQFIMS
|
|---|
| |