| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1392 |
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| Symbol | |
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| ID | 3738613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 1558696 |
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| End bp | 1559556 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637778674 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_384351 |
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| Protein GI | 78222604 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 54 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.975798 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCA CGGGAAAGAC ACGGGTGCTT GGCATTATCG GCTGGCCGGT GGCCCATTCC
CTGTCGCCGC TCATGCAGAA CGCCGCCCTG GAGGCCATGG GGCTCGACTG GATCTACGTT
CCCTTCGCCG TGCGCCCGGA AGACCTCGCC AGTGCCGTGG CGGGACTCAG GACCCTTGGC
GTTTCCGGAT TCAACGTGAC CATCCCCCAC AAGACCGCCA TCATCCCCCT TCTTGACCGT
ATTACCCCCG AGGCGCGCCT CATGGGGGCG GTCAACACGG TGAAACGGGA AGGGGATGAT
CTTGTGGGTT ACAATACCGA CGGTGAGGGC TTCATCCGGT CCCTGGCGGA AGACCTCGGG
TTTGTCCCGG CCGGAAGGCG CATCCTTGTC CTGGGAGCTG GGGGAGCGGC CCGGGCTGCT
GTGGCATCAC TGGCCCGGGG AGGGGCCGCT ACCGTCATGA TTGCCAACCG GAGCGTGGCC
AGGGGGGAGG AGCTGGTGGA AGCATTTCAA GGTGTGTTTG GCGGCACGCA ATTTGCTGCA
ATGCCTCTCG ATATCCCCCT GATCAATGCA GAAGTCCAAA ATTTTGACTT GCTCGTTAAT
ACCACGTCCG TGGGGATGGG GGAAACCGCA TTCGAAGGGC TCGATATCTC GCGCATGAAC
CCCGCTGCTT CCGTGTACGA CATGGTCTAT GCCCCCTGGG AAACACCGCT TCTTGCCGAG
GCATCCCGGG GGGGGAGGCG GTGCGCGAAC GGGATCGGCA TGCTTGTGGC GCAGGGTGAG
TGCGCCCTTG CCATCTGGAC CGGCATGGAG CCGCCACCCG GCATCATGAG GAGACGTGTT
CTGGCAGCCC TGAAGCGCTA A
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| Protein sequence | MDITGKTRVL GIIGWPVAHS LSPLMQNAAL EAMGLDWIYV PFAVRPEDLA SAVAGLRTLG
VSGFNVTIPH KTAIIPLLDR ITPEARLMGA VNTVKREGDD LVGYNTDGEG FIRSLAEDLG
FVPAGRRILV LGAGGAARAA VASLARGGAA TVMIANRSVA RGEELVEAFQ GVFGGTQFAA
MPLDIPLINA EVQNFDLLVN TTSVGMGETA FEGLDISRMN PAASVYDMVY APWETPLLAE
ASRGGRRCAN GIGMLVAQGE CALAIWTGME PPPGIMRRRV LAALKR
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