Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_1386 |
Symbol | |
ID | 3738607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 1550693 |
End bp | 1552972 |
Gene Length | 2280 bp |
Protein Length | 759 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637778668 |
Product | 3'-5' exoribonuclease, VacB and RNase II:ribonuclease R |
Protein accession | YP_384345 |
Protein GI | 78222598 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000570433 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 0.26711 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGGA ATCGGGAAAC GGTGCAGGCG GTGATCCGCG AGCGGGGCGG TTCTGCCCCT TTCCGGGAGC TGATGCTGGC TTTCGGGGTG ACCAAGGGGG AGCGGCAGAG TTTCAAGGGG TTCGTGGACA AACTCGTCAC TGACGGCCAT CTCGTGCGAC TCAGGGGAAA CCGCTATGCC CTGGCCGATG GGGAGAATCT CGTGACCGGG CGGCTCACGT GCCACCCGGA CGGCTACGGT TTCGTCATTC CCGAAGGGGG AGGGGACGAC GTCTATATCC CGGCCCGGGC CCTTGCCGGG AGCATGCACG GTGACACGGT GGAGGTGCGG GTCGAGACCT TCAAGGCCGG CGGCAAGAAG GAGGGGCGGA TCGTGCGGAC CGTGACGCGG GGGCAAACCC GTGTCGTGGG GCGGTTCGAG CAACTCAAGG GATTCGGGGT CGTGGTTCCC GATGAAACCC GCATCAGCCA GCAGATTGTC ATCTCTCAGC AGGGAATCGG TCGGGCCAAG GGGGGACAGA CGGTCGTGGC CGAGATCACC GCCTACCCCA CGGAGAAGCG CAGGCCCGAG GGGCGCATCG TGGAGGTGCT GGGGTGGCCC GACGACCCTG AAGTGGAAGT CCGGACCATT ATCGCCAAGC ACGGGCTCCC CTTCGAGTTC CCCGCCGAGG TGCTGGACGA GGCCCGGGCC GTTCCTCAGG CCATCGGGGA GAAGGATCTG CAGGGGCGTA CCGATCTGCG GGAGATCGTG ACCGTCACCA TCGACGGCGA GACGGCCCGG GACTTCGACG ATGCCGTGGC GGTCCGGAAG GAGCGGGGGG GGAACATCCG CCTCTGGGTC TCCATCGCCG ATGTCTCCCA TTACGTGAAG CCCGACGCGC CCCTGGACCG GGAGGCGTAC CTGCGGGGGA CCTCGGTCTA CTTTCCCGAC CGCTGTATCC CCATGCTCCC CGAGGAGCTT TCCAACGGCA TCTGCTCCCT GAACCCCCGG GTGGAGCGGC TCACCATGAC GGCGGAGATG CTCTTCACCC GCAGCGGCAC CATGAAAGAG GCCACTTTCT ACCCGAGCGT AATCAAAAGC GACGCCCGGC TCACCTACAC CATTGTAAAA AAGATTCTCG TGGACGGCGA TGCCGAGGCC ATGGCGGCTC ACCAGGAGCT GGTCCCTCAC CTGGAAGTCA TGCGGGAGTT GGCCCAGAGC CTCACGGAGA AGCGGCGTAA GCGGGGGAGC ATCGACTTTG ATCTCCCCGA GCCCCAGATT ATCCTCGATC TCCAGGGGGA GACCGTCGAC ATCATCCAGG CCGAGCGGAA CCTGGCCCAC CGGATCATCG AGGAGTTCAT GCTGGCCGCC AACGAGGCGG TTGCATCCCA CATCGAGGCA AAGGGAATCC CCTCCCTCTA CCGGGTCCAC GAGCCCCCTG ACCCGGCAAA GCTCATCGAC TTCCAGGAGT TTATCTTCAA TTTCGGCTTC CACTTCCGGA TGGAGGGGGA CCGGGTGGAG CCGGCGGAGA TCCAGCGGCT TCTGGTGGAG ACCGAGGGGA CGCCGGAGGA GCGGATGATC AACCAGGTGC TCCTGCGGTG CATGAAGCAG GCCCGCTACA GTCACGAGAA CCTGGGGCAT TTCGGGCTTG CGGCCCGCTG TTACACCCAC TTCACGTCCC CCATCCGCCG CTACCCTGAC CTGGTCGTCC ACCGCATCCT CAAGGCGCTC CTGGCCGGGA AGATTACCGA CAAGGAGATC GCACGGCTGG AGACAACCCT CCCCGAAACG GCGGAGCAGA CCAGCCGGCG GGAGCGGGTC GCCATGGAGG CGGAGCGGGA GATCGTGGCC CTCAAAAAGG CCCAGTTCAT GCTCCAGAAG ATCGGGGAGG ACTTCGACGG CTACATCACC GGGGTCACGT CCTTCGGCCT TTTTGTGGAG CTGACGGAGA TATTCGTGGA GGGGATGGTC CACATCTCCA CCATGGGTGA CGACTACTAC CGCTATGTGG AGAAACAGCA TTCCCTGGTG GGTGAGCGGA CGAAGGAGAC CTACCGGATC GGCGACAAGG TGCGGGTGAC CGTGGCGGCG GTGAGCATCG AGAAGAAGCA GGTCGAGTTC GTGCTGGCCG GGCTTCATGA GCGGCGGCCC GGTGCCTCGT CGCCGCCGGG GTCGGAGGAG TACCCGCGGA TTGCCGTCAC GGGGAAGCGC CCCCGGGTTC TTGAAGAGCG ACGACGCCAG TCGAAGGGAG ATAAGAAGGG AAGCGGCAAG GGGAAGGGGC CACGCGGGAG GCGCCGGTAA
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Protein sequence | MKRNRETVQA VIRERGGSAP FRELMLAFGV TKGERQSFKG FVDKLVTDGH LVRLRGNRYA LADGENLVTG RLTCHPDGYG FVIPEGGGDD VYIPARALAG SMHGDTVEVR VETFKAGGKK EGRIVRTVTR GQTRVVGRFE QLKGFGVVVP DETRISQQIV ISQQGIGRAK GGQTVVAEIT AYPTEKRRPE GRIVEVLGWP DDPEVEVRTI IAKHGLPFEF PAEVLDEARA VPQAIGEKDL QGRTDLREIV TVTIDGETAR DFDDAVAVRK ERGGNIRLWV SIADVSHYVK PDAPLDREAY LRGTSVYFPD RCIPMLPEEL SNGICSLNPR VERLTMTAEM LFTRSGTMKE ATFYPSVIKS DARLTYTIVK KILVDGDAEA MAAHQELVPH LEVMRELAQS LTEKRRKRGS IDFDLPEPQI ILDLQGETVD IIQAERNLAH RIIEEFMLAA NEAVASHIEA KGIPSLYRVH EPPDPAKLID FQEFIFNFGF HFRMEGDRVE PAEIQRLLVE TEGTPEERMI NQVLLRCMKQ ARYSHENLGH FGLAARCYTH FTSPIRRYPD LVVHRILKAL LAGKITDKEI ARLETTLPET AEQTSRRERV AMEAEREIVA LKKAQFMLQK IGEDFDGYIT GVTSFGLFVE LTEIFVEGMV HISTMGDDYY RYVEKQHSLV GERTKETYRI GDKVRVTVAA VSIEKKQVEF VLAGLHERRP GASSPPGSEE YPRIAVTGKR PRVLEERRRQ SKGDKKGSGK GKGPRGRRR
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