| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1338 |
|---|
| Symbol | |
|---|
| ID | 3738478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1496100 |
|---|
| End bp | 1498040 |
|---|
| Gene Length | 1941 bp |
|---|
| Protein Length | 646 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637778619 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_384298 |
|---|
| Protein GI | 78222551 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.0399433 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAAC CATTCACCTT CATGCTCTCC CAACGTCGCC TGATGGTCTT CGCCCTCGAT
ACGGCGTCCA TCGCTGCGTC GTTCCTCCTC GCCTTCCTCC TCCGCTTCGA CTTCACCTTT
CCGCCGTTGT ACCACGAAAT TATCAAGGAC GGCCTGCTGG TTGTCCTGCT TGTAAAGCCT
CTGGTTTTCC TTTTTTCGGG CATGTACCGC AGTATCTGGA AATACGCTTC ATTACAGGAC
GGCATCGAAA TTTTCAAGGT AGTAACCCTT TCCACGCTCA TCACCTCCTT TGTCCTTTTT
TTCCTGCATG ATACCAGTGC CATGCCCCGT TCCATCTATG TGCTCGACTG GGTTCTGCTC
TTTGCCATGG TATCGACGTC ACGGCTTCTG TGGCGGGTCT ACCGTGAGAC CTACATCATC
CCCCGCTACC ATACCGGCAA GCGGACGCTG ATCGTCGGAG CCGGCGAGGC GGGCAACCTG
CTATTGAAGG AAATAAGAAA GCAGAAAAAT CCAGCAAACC AGGTCATCGG ATTCCTCGAC
GACGACCCGG CAAAGCAGGG GATGCGCCTG GGAGGGATTC CGGTTATGGG TGATCTCGGC
CGCCTTCGGG CCGCCATCCG GAAGCACCGG ATTGAAGAGG TCATTATCGC CATCGCGACT
GCCCAGGGTG CTCTAACGCG CCAGGTTGTC TCCTGCTGCA AGGAGACCAA GGTCAGGTTC
AAGACCCTGC CGGGGATCAA GGATATCATC GATGGCACGG TCTCCATCTC CCAGATCAAG
GATGTGGAGA TCGAGGACAT TCTCGGCCGT GAGCCGGTGA AGCTGGACCT GGAAACCATC
CGGGGATACC TGACCAACAA GCGCGTACTG GTGACCGGCG CGGCGGGGAG CATCGGCAGC
GAAATCTGCC GCCAGGTGGC AGCGTTCTCC CCCTACAAGC TGCTCCTCTT CGAGAGCGCG
GAAACCCCCC TCTACCAGAT CGAAAAAGAG CTTACGGCCA GCCACCCTGA TCTCCGGATC
ATTCCGGTCA TCGGCGACGT GCGGGACCAG GCCAGGGTCG AGATGGTTTT TGACGAGTTC
CAGCCCGAGG TGGTCTTTCA CGCGGCAGCC TACAAGCATG TGCCGATGAT GGAGTATAAC
CCGGTGGAAG CGGTTACCAA CAATATCGGC GGTACTCGAA CGCTGGCGAA TGCAGCCCAT
CGGTTCGGGG TTAAGAATTT CGTCATGATC TCCACCGACA AGGCGGTGAA CCCGACCAAC
ATCATGGGGG CTTCGAAGCG GGTTGCGGAG ATGTATGTCC AGGGCCTGGC GAGGAAGAGC
CGGACAAATT TTACCACTGT CCGTTTTGGT AACGTGCTGG GGAGCAACGG GAGCGTGATC
CCGCTCTTCA AGGAGCAGAT CAAGGCGGGA GGGCCGGTTA CGGTCACCGA CCCCAAGGTG
ATCCGCTACT TCATGACCAT CCCCGAGGCG TGCCAGCTGG TGCTCCAGGC AGGGTGCATC
GGCAACGGCG GCGAGATCTT CGTACTCGAC ATGGGGGAGC CGGTCCGCAT CCTTGACCTG
GCGGAAGAGC TGATCAGGCT TTCGGGGTTT GTTCCCCATG AGGAGATTGA TATCGTTTTC
ACGGGATTGC GGCCCGGCGA GAAGCTTTTT GAGGAACTGC TCATCGACGG CGAGGGGATC
AAGCCGACAC GGCACGGGAA GATCAAGGTT CTTGCGGCTA TGGATTCCGA TTTCGATGCC
GTTGAAAGGA ATCTGGGCGT TCTCTTTGCC ATGGCCGGGA ACGCCGACAT CGCGGGTATC
GTGAAGCAGC TTCGGGTGCT TATCCCGGAA TTCTCGCCCC AGTATTCTTT CAACGGTCCG
GCCCCCATTG CGTTCCAGCG GGTCCGTCCC GATCTTTTCC CGCCCCCGTC TTCGAAGGTG
GTCAAGTTGC AGAAGTCGTG A
|
|---|
| Protein sequence | MLKPFTFMLS QRRLMVFALD TASIAASFLL AFLLRFDFTF PPLYHEIIKD GLLVVLLVKP
LVFLFSGMYR SIWKYASLQD GIEIFKVVTL STLITSFVLF FLHDTSAMPR SIYVLDWVLL
FAMVSTSRLL WRVYRETYII PRYHTGKRTL IVGAGEAGNL LLKEIRKQKN PANQVIGFLD
DDPAKQGMRL GGIPVMGDLG RLRAAIRKHR IEEVIIAIAT AQGALTRQVV SCCKETKVRF
KTLPGIKDII DGTVSISQIK DVEIEDILGR EPVKLDLETI RGYLTNKRVL VTGAAGSIGS
EICRQVAAFS PYKLLLFESA ETPLYQIEKE LTASHPDLRI IPVIGDVRDQ ARVEMVFDEF
QPEVVFHAAA YKHVPMMEYN PVEAVTNNIG GTRTLANAAH RFGVKNFVMI STDKAVNPTN
IMGASKRVAE MYVQGLARKS RTNFTTVRFG NVLGSNGSVI PLFKEQIKAG GPVTVTDPKV
IRYFMTIPEA CQLVLQAGCI GNGGEIFVLD MGEPVRILDL AEELIRLSGF VPHEEIDIVF
TGLRPGEKLF EELLIDGEGI KPTRHGKIKV LAAMDSDFDA VERNLGVLFA MAGNADIAGI
VKQLRVLIPE FSPQYSFNGP APIAFQRVRP DLFPPPSSKV VKLQKS
|
|---|
| |