| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0987 |
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| Symbol | |
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| ID | 3738091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 1094700 |
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| End bp | 1096919 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637778266 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_383954 |
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| Protein GI | 78222207 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000757549 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.00276789 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGGGCGTTT ACTGTGTAAT GGCCGGCGGT TTCTTCTATT TCAGCCGATT TGGCCTTTTT
TTGTCACCAT CGCAACACAT ACTCCTTCTT GCCGCTCTTG CCGCGGTTGT TTGCTACAAC
CTGCTGCTTC AGTTTTCCCG CGACCGCCTT GCCCGTGGTT TCCGCCTTCT CAATTTCCTC
CAGATTATCC TCGACCTTGT CCTGGTGTCG GTGCTGATCC ATACGAGCGG CGGAGCAGCC
AGCTGGTTCT GGCCCGCATA CCTGTTCGTC ACCATAGAGG CATCCTTCCT CATCGAAGAT
CGTCGTGAAG TCTGGCTCGT GGGTGGACTT GGCGGCCTTC TCTACGGAGC GGTGCTGGTG
CTCGAGCATT TGAACATCGT TCCCTATGTG CGGATGCCCT TCGTGGGCTC CGAGCTCCAC
CACGATCATC TGTATCTGCT CCTGACCTGG CTCTGGGTTT CGCTGCTCAA TGCTGCCATG
GCGGCCATAG CCTCTTATTT CATGACGGTT ATCCGTCGGG AAACCGACGC GGTCCGTGAG
GGGGAGGAGC GGCTCGCCAC ATTCCTCGAC ACGGCCAATG ACCTGATCCA CAGTGTGACC
CCGGATGGTC GGCTCCTCTA TGTGAACGAA GCCTGGCAGC GGACCCTTGG CTATTCGGCT
GAAGAGGCGG ACGCGGTTCC TTTCTTCGAT ATCCTCCATC CCGACAGCCG CGAGCAATGC
TGCGCCGAAC TGCAGCGGGT TGTTTCCGGT GATGCCCTGA GCCCAATGGA GGCGGTTTTC
ACGGCGAAGG ACGGCCGTTC AGTCATCGTG GAGGGGAGCC TCTCCTGCGC TCACGGAGGG
GACGAATCCT CGGTCATCTG GAGCATCTGC CGCGACATCA CGGAACGGAA GCATGCCGAG
GAGCAGCTCT ATCGGCTCGC CCACCACGAT ACCCTCACGG GGCTGCCGAA CCGGATTCTC
TTCATGGATC GGCTCCAGCA GGCCAAGGCC CTGGCGAACC GCTACCGTTA CCAGGTTGCG
GTCCTGTTCC TTGACCTCGA CCGCTTCAAG ATCATTAACG ACACCCTCGG GCATCCCGTG
GGGGATCACC TTTTGCAGCA GGTGGCCCAC CGGATCGCGG GATGCGTGCG GGAAGTCGAT
ACCGTGGCGC GCATCGGCGG CGACGAGTTC ACCATCATTC TCGTGAATGT CGACACCGTC
GAGGACGTAA AGAGAATGGG GCAGAAGATT CTGAAGACGC TCGCCGCCCC CTTCAATATC
GACACCCATG AGCTTTTCGT CACGGCGAGC ATCGGCATCT CCCTCTTTCC CTCCGATGGC
GATAACCTGG ACCAACTGGT GAAGAAGGCC GATATCGCCA TGTATTGCGT GAAAGGGGAG
GGGAGGAATA ACGTTCAGTT CTATTCTCCC CAGATGGACG CCAACGCCGA CAAGCGGCTA
CTGCTGGAAA CGAGCCTGCG CAAGGCCCTC GACAACAGGG AGTTCAGGGT CTACTACCAG
CCAAAGGTTG ACATCGTCTC CAAGAGAATT ACCGCCATGG AAGCACTGAT ACGATGGGAT
CACCCAATTC TGGGGCTCGT TTCGCCCGGG GAGTTCATTC CCCTGGCCGA AGAGACGGGA
CTCATCATCC CGATAGGTGA GTGGGTGCTC CGGGCCGCCT GCTTCCAGAA CTGCGAGTGG
GTCAGGCAGG GAATCCCCCC CATGCGGGTG GCGGTGAATC TCTCCGGCTA TCAGTTCCAG
CAGAAGAACC TTCTGGAAAC GATCCGGGGA ATCCTGGACG AAACCGGGCT TACCGCGGAT
CTCCTGGAGC TTGAGATCAC CGAGAGCGTC ATCATGCAGA ACCCGGACTT CGCCGTGTCG
GTGCTCAACC AGTTGAGGGA TCTCGGGGTC CACATCTCCA TCGACGATTT CGGCATCGGC
TATTCTTCCC TGGCGCACCT GAAGCGGTTC TCGGTCAATA CGCTCAAGAT CGACAAGTCA
TTCGTGCGGG ATGTGGAGAT CAACTCGGCC GACGCCGCCA TTGCCACGGC CATCATCGCC
ATGGGGAACA GTCTCAACCT GAAGGTCATC GCCGAGGGGG TCGAGACGGA GGGGCAGCTA
TCGTTTCTCT CCGACAACAA GTGCGACGAG GTGCAGGGAT ACCTCTTCAG CACCCCGATG
CCGCCGGAGA AGGTCGCCGA GTTCATGCGG GAGCATGGGA GATCGGCCGG AAGGGGGTAG
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| Protein sequence | MGVYCVMAGG FFYFSRFGLF LSPSQHILLL AALAAVVCYN LLLQFSRDRL ARGFRLLNFL
QIILDLVLVS VLIHTSGGAA SWFWPAYLFV TIEASFLIED RREVWLVGGL GGLLYGAVLV
LEHLNIVPYV RMPFVGSELH HDHLYLLLTW LWVSLLNAAM AAIASYFMTV IRRETDAVRE
GEERLATFLD TANDLIHSVT PDGRLLYVNE AWQRTLGYSA EEADAVPFFD ILHPDSREQC
CAELQRVVSG DALSPMEAVF TAKDGRSVIV EGSLSCAHGG DESSVIWSIC RDITERKHAE
EQLYRLAHHD TLTGLPNRIL FMDRLQQAKA LANRYRYQVA VLFLDLDRFK IINDTLGHPV
GDHLLQQVAH RIAGCVREVD TVARIGGDEF TIILVNVDTV EDVKRMGQKI LKTLAAPFNI
DTHELFVTAS IGISLFPSDG DNLDQLVKKA DIAMYCVKGE GRNNVQFYSP QMDANADKRL
LLETSLRKAL DNREFRVYYQ PKVDIVSKRI TAMEALIRWD HPILGLVSPG EFIPLAEETG
LIIPIGEWVL RAACFQNCEW VRQGIPPMRV AVNLSGYQFQ QKNLLETIRG ILDETGLTAD
LLELEITESV IMQNPDFAVS VLNQLRDLGV HISIDDFGIG YSSLAHLKRF SVNTLKIDKS
FVRDVEINSA DAAIATAIIA MGNSLNLKVI AEGVETEGQL SFLSDNKCDE VQGYLFSTPM
PPEKVAEFMR EHGRSAGRG
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