| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0975 |
|---|
| Symbol | |
|---|
| ID | 3738216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1082821 |
|---|
| End bp | 1085433 |
|---|
| Gene Length | 2613 bp |
|---|
| Protein Length | 870 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637778254 |
|---|
| Product | type II and III secretion system secretin |
|---|
| Protein accession | YP_383942 |
|---|
| Protein GI | 78222195 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.338671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATCC AACTCACAAT ATCCCGCAAC CTTGCCTTTC TGTCCCTGTT GGGCGCGTTG
TGCGGCTGTG CCGCCACTAA CGCCTCCGTT ATGGGCGACA AGGAGACGAG CCAGTCCTCG
GCTCCGGTGA TCCGGGACAT CCGCGTTACG GGGGAGGGAG ACAATGCCCA GGTAAGCATC
TCGGCTAACC GTCCCCTCGC GTACACTTTT TACATGGCGG CGAATCCTCC CAAGGCGGTC
GTAGATCTTG CCCAGGTGCA ACCGGGTGCC TTTTCCGCGC CCATGGAGAT CAACGCCGGA
AACATCAAGC GGATTGCCAC CACCCGTGTG GGTGAGGGGG AAGCCGCCAT GACCCGGGTA
GAGGTCTTCC TTGCCCGGGA TGCGGAGATG ACGGCTGCCA CGGATCCCGC CGACAAGGGA
ACAATGCGTC TGGCCTTTGT CCCCCCGCCG GTTCCTGCTT CTGCCGCACC GGCCAAAGCC
GAGCCGCCGG CGCCTGCCGC TGCGCCGGAA CCGGTAGCTC CGCAGCCCGC TAATACGCCT
GTAGCTGCAG AACGTAAAAT CGCCGATGCC ATCACCGCCA TTACTCCCCG TAAAGACTCC
CTTGAAATCC GGACCACGGG CGAGGTGGCC GATTTCAAGA CGTTCCGGCT CACGAAGCCC
GACCGCCTCG TGCTCGATGT CTTCGGCGTC AAAGCGGCCC TGGCCCAAAA GGTTGTGCCG
GTCAACAGCC TTGGGATCGA GACCGTCCGG GTAGGCGCCT ATCCCGACAA GGTGCGTCTT
GTCCTCGATG CTTCAGGTGA CACCCTTCCC GCCTTCACGG TGGAGAAGAC CGCCGCCGGC
CTCGCCGTGG TTCCGTCATC ATCCCCGGCT GCCGTCGCGG CGAAGTCTCG TGAGTCCGAG
CAGACGACAC CCGCCCTTGT GACGGGCGCG GCTCCCAAGG CGGAAGCCAA GCCCGTTGTG
CATGCCGGGG CACCTGAAGT AGATTCGATA GAATTCAAAG TGGTGGATGC CATCTCCCGC
ATCGCCATTG AAACGACTGC CCCGTGCAAC GCTGAAAAGC CAGTCAAGTC CGCCGAAGGT
CTGACGCTTA CTCTCAAGAA CTGCATTCTG CCGCGGAAAT GGCAGCGGCA TCTCGACACG
AGCGCTTTTG CCAGCGTTGT CCAGAAGGTG ACCCCCTACC AGGTCAAGGT AAAGGGGCGT
CACGACGTGA AAGTGCAGGT CGCGTTACGG AGGCAGACTT CCTATGAGTT GCGCAGGGAA
GGGGGAGTCA TTTACCTTGA CCTGAAGAAT CCGGTTGATA TCACTGCGGC ACCGGTCGCA
TCGGAGCCGG CCAAGCAGAC CGAGTCTGAA CGGTCCGCTC CTGTGGTCGT CAAATCACAG
GCTGTTTCAC CGACGGCAGC CGCGGACGGG AAAAAGGTCT ACACGGGGCG CCGGGTCACC
CTCGAATTCT CCGATGCCGA TATCAGGAAG ATCTTCCAAC TTATTGCCGA AGTCAGCAAT
CTGAACTTCA TCGTCGGTGA CGATGTCACC GGCACCATCA GCCTAAAGCT GGTGAACGTT
CCCTGGGACC AGGCCCTCGA CGTAATTCTT GAGAACAAGG GGCTCGGGAT GCAGCGGGAC
GGCAACATCG TTCAGATCCG TCCCAAATCC AAAATCATGA CCCTTGCCGA TGAAGAGCAG
AAGGCCAAAA AGTCCCGCGA ACAGGGGATG GAACTCAAGA CCGAGGTCTT TGACGTCAAC
TATGCCGCAG TGGGCGATGT GGTCACCCAG TTCAACACCC TCAAGAGCGA GCGGGGGATG
ATTTCCCAGG ATGCCCGCAC CAACCGGGTC ATCGTCAAGG ATATCGCACC GGTGGTGGCG
GAGATGAGGA ATCTGCTGAA GAGTCTCGAC ATCCCCGAGA AACAGGTAAT GATCGAGGCC
AGAATCGTTG AGGCGAGTTC CACTGTCACT CAGGAACTCG GCATTCAATG GGGCATACAC
GCTCGTGATG CGAATACTAT TGGCGTGACG AATGCTGACG TGGGGTTTGG TGGAATCCTC
ACCGGGCTTG CGCCAACTGC GGGTACATTC GGTCCTGGTG CTGCGGCCGG CATAACATTT
GGGAAACTCA TTTCCGGCGG GTCCCTTGAC CTGAAACTGT CCGCATTGGC TTCGGGAGAG
AGGATAAAGA TAATTTCATC GCCCAAAGTC GTGACCCTTA ACAACAAAGC AGCCAAAATA
TCCCAGGGAC AATCTATTCC TTATTCGACT GTCTCTGCTG AAGGGACGAA AACAGAATTC
GTTGAAGCGG CATTGACGCT GGAAGTGACG CCCCACATTG CTTCCGATGG AAGCATCAGT
ATGAAGATCA AGGCGACTAA CAACTCTGCT GCGCCAGCAC CGACAGGGGC TGTTCCGGCA
ATAAACAAGA AAGAGGCGAC CACAGAGCTT TTGGTAAGGA ATGGTGAAAC CACAGTTATT
GGCGGGATTT ACGTGGATAA TGATTCTCAG GCTGATCAGG GCGTCCCGTT CTTTAAAGAT
ATCCCATTGC TTGGCTGGCT GTTCAAGTCA AGCAATACGC AAAAAATCAA GAACGAACTG
CTAATTTTCA TTACTCCTAA AATCGTTCTG TAA
|
|---|
| Protein sequence | MRIQLTISRN LAFLSLLGAL CGCAATNASV MGDKETSQSS APVIRDIRVT GEGDNAQVSI
SANRPLAYTF YMAANPPKAV VDLAQVQPGA FSAPMEINAG NIKRIATTRV GEGEAAMTRV
EVFLARDAEM TAATDPADKG TMRLAFVPPP VPASAAPAKA EPPAPAAAPE PVAPQPANTP
VAAERKIADA ITAITPRKDS LEIRTTGEVA DFKTFRLTKP DRLVLDVFGV KAALAQKVVP
VNSLGIETVR VGAYPDKVRL VLDASGDTLP AFTVEKTAAG LAVVPSSSPA AVAAKSRESE
QTTPALVTGA APKAEAKPVV HAGAPEVDSI EFKVVDAISR IAIETTAPCN AEKPVKSAEG
LTLTLKNCIL PRKWQRHLDT SAFASVVQKV TPYQVKVKGR HDVKVQVALR RQTSYELRRE
GGVIYLDLKN PVDITAAPVA SEPAKQTESE RSAPVVVKSQ AVSPTAAADG KKVYTGRRVT
LEFSDADIRK IFQLIAEVSN LNFIVGDDVT GTISLKLVNV PWDQALDVIL ENKGLGMQRD
GNIVQIRPKS KIMTLADEEQ KAKKSREQGM ELKTEVFDVN YAAVGDVVTQ FNTLKSERGM
ISQDARTNRV IVKDIAPVVA EMRNLLKSLD IPEKQVMIEA RIVEASSTVT QELGIQWGIH
ARDANTIGVT NADVGFGGIL TGLAPTAGTF GPGAAAGITF GKLISGGSLD LKLSALASGE
RIKIISSPKV VTLNNKAAKI SQGQSIPYST VSAEGTKTEF VEAALTLEVT PHIASDGSIS
MKIKATNNSA APAPTGAVPA INKKEATTEL LVRNGETTVI GGIYVDNDSQ ADQGVPFFKD
IPLLGWLFKS SNTQKIKNEL LIFITPKIVL
|
|---|
| |