Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_0088 |
Symbol | |
ID | 3739414 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 110601 |
End bp | 112076 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637777366 |
Product | sigma-54 factor, interaction region |
Protein accession | YP_383062 |
Protein GI | 78221315 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00217013 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0000044852 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAGCTA TCGAGACAAT ACTGGCGACG GAGCGGGATT TTTTTGCCAA GGTGGCCCGG GCCGCCTTCC TCAATCCCTT TGGCGAGAGC CGCGACGAAC TGGACCTGCT CCTGGCGGGA ACTGGTGCCG GTGACCGGGG CGGAGTGCTT GCCGCCATCA TTGCCCGGGT GGCCGAACGG ACGGCCGTCC TGCAGCGGGA ACTGCGGGGC AACCACCACC GCCTGCCGGC TGCCGACCGG GAAACGGTCC GGACTGTGCT CCTCTTCGAT CTCTTTCATC GGTTCCTGGA CTCCTTCGAC CGCCTGATCC GGGAGCAGGC CGTCGGCGGC GACTCCCCCT GCCCCGTCCC CTTTGCCGGC GGCTTCCAGG CCGCCTTCGC GGAGGCGGGC TTCTCCGAGA CGGAAAGCCG CCGCTACCTG GGCCTCTTCT ACCAGCTCCG GCGGGCCTTC TACTTCATCC GGGAAGGGCT CGCCGGTTCC AGCCCGTCGC TGCGCCGGGT GCGGGAACAC CTCTGGCAGA CCCTCTTCAC CCACAACATC CGGTGGTTCG ACCAGTACCT CTGGGACCGG ATGGAGGACT TCTCCGTACT CATCCTCGGG GAGACCGGCA CCGGCAAGGG GGCCGCAGCC GCGGCCATCG GCCGGTCGGG CTTCATCCCC TTCGACCCGA AAACCGGCCG GTTCAGCGAA AGCTTCACCC GCAACTTCCT GGCGGTGAAC CTCTCCCAGT ACCCGGAGGG GGTCCTGGAG TCGGAGCTCT TCGGCCACCG GAAGGGGGCC TTCACCGGCG CCATCGATCA CCATGAGGGG GTCTTCAGCC GCTGCACCCC CCACGGCGCC ATCTTCCTGG ACGAGATCGG CGAGGTGCCG CTGCCGGTGC AGGTGAAGCT CCTCCAGGTG CTCCAGGAGC GGAGCTTCTC GCCGGTGGGG AGCCACCAGC GGCTCCGCTT CAGCGGCCGG GTCATCGCCG CCACCAACCG GGACCTGACC CGCCTGCGGG AGCAGGGGGA GTTCCGGGAC GACTTCTACT ACCGCCTCTG TTCCGACGTC ATCACCATCC CACCCCTGCG GCAGCGGCTC CAGGAATGCC CCGACGAGCT GGGGGAGCTG GTGGCGGGAA TCCTCACGCG CCTGACCGGG ACCGCGCCGA AGCGGGAGGT GCAGCTATTG CGCAAGGCCA TCGAACGGGA AACGGGAAAG GGATACCACT GGCCGGGAAA CGTGCGGGAG CTGGAGCAGG CGGTGCGGCG GGTACTGGTG ACGGGACATT ACCGGGGGGA AGAGAAAGGG GCGCCGTCCG GCGTGACGGA GCAGTTCCTG GCGGACGTGG CGGCGGGGGG GCTCGATGCC CAGGGGCTTC TGGCCGGCTA CTGCCGCATC CTGTACGAGC GGCACGACAC CTACGAGGAG GTGGCCCGCC GGGCCAACCT GGACCGGCGG ACGGTGAAGA AGTATCTGCA GCAAGCAGGG GAGTGA
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Protein sequence | MKAIETILAT ERDFFAKVAR AAFLNPFGES RDELDLLLAG TGAGDRGGVL AAIIARVAER TAVLQRELRG NHHRLPAADR ETVRTVLLFD LFHRFLDSFD RLIREQAVGG DSPCPVPFAG GFQAAFAEAG FSETESRRYL GLFYQLRRAF YFIREGLAGS SPSLRRVREH LWQTLFTHNI RWFDQYLWDR MEDFSVLILG ETGTGKGAAA AAIGRSGFIP FDPKTGRFSE SFTRNFLAVN LSQYPEGVLE SELFGHRKGA FTGAIDHHEG VFSRCTPHGA IFLDEIGEVP LPVQVKLLQV LQERSFSPVG SHQRLRFSGR VIAATNRDLT RLREQGEFRD DFYYRLCSDV ITIPPLRQRL QECPDELGEL VAGILTRLTG TAPKREVQLL RKAIERETGK GYHWPGNVRE LEQAVRRVLV TGHYRGEEKG APSGVTEQFL ADVAAGGLDA QGLLAGYCRI LYERHDTYEE VARRANLDRR TVKKYLQQAG E
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