| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0002 |
|---|
| Symbol | |
|---|
| ID | 3739904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1837 |
|---|
| End bp | 2958 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637777281 |
|---|
| Product | DNA polymerase III, beta subunit |
|---|
| Protein accession | YP_382977 |
|---|
| Protein GI | 78221230 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.394263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCA AGATCGACAA GGAAACCTTC TCCCGGGCTC TCCAGAAGAT CCAGGGAATC
GTCGAAAAGA GGAACACCAT GCCGATCCTC TCCAACGTCC TTATCGAGGC CCATGCCGAT
CGGATCGAGC TGACGGCCAC GGACCTGGAA GTGGGAATGA AGAGTTCCTA CGAGACGACT
GTGACCCGGG AGGGACGAAT CACCGTTTCG GCCAAGAAGC TCTACGAGAT CGTCAAGGAA
CTCCCCGAGG AAGCCATCTC TTTCGCCACC AAGGAGAACG ACTGGGTGGA AATCCGCTGT
GGCAAGGCCC ATTTCAGCAT CGTCGGCCTT TCCCCCGAGG AGTTTCCCTA TTTCCCCAAG
GTGAACGAAG AGAGCCTGAT CCGGATCGAG GGGGCGCTCC TGGCCGACAT GATCGAGAAG
ACCGCCTACG CCATCTGCTT CGACGAGACC AAGTACAACC TGAACGGCAC CTTCGTGAAG
GCCACCGTTG AAGATGATAA ACCGATTCTC CGGATGGTGG CCACCGACGG CCACCGCCTC
TCCATCGCCG AGAAGGAATT CCACGGGGCC GTGGGGCCCG AGATGGCCAA GGGGGTCATC
TTCCCCAAGA AGGGTATCTT CGAGCTCAAG AAGATCTGCG AGGAGGCGAC CACCGAAGAA
CTGGCCCTCG GCTTCATGGA CAACAGCGCC GTCATCAAGA AGGGGAACAC CGTGGTGGTG
ATGCGGCTCG TGGACGGTGA GTTCCCCGAC TACACCCGCG TAGTCCCCGT GGCCAACGAC
AAGATCGTGA CCGTGGCCCG GGATCCGTTC CTCCACTCCC TGCGGCGGAT GTCGATCCTC
TCCAGCGAGA AGTTCAAGGG GATCCGGATG GAGATCAACG GCGAGCAGAT GATCATCTCC
TCCAGCAACC CTGAACTGGG GGAAGCGTCG GAGGAACTGG ACGCGGCCTA CAGCGGCCCT
CCCCTTTCCA TCCGGTTCAA TGCCAAGTAC CTCCTGGACG TCCTGGCGGT CCTCAACGAG
AGCGAAGTGG CGCTGGTCCT CCGGGACGAG CTGTCGCCGG CCATCGTGAA ACCGGCCGCG
GTCGACGGTT TCACCGCGGT GATCATGCCG ATGCGGCTGT AG
|
|---|
| Protein sequence | MEFKIDKETF SRALQKIQGI VEKRNTMPIL SNVLIEAHAD RIELTATDLE VGMKSSYETT
VTREGRITVS AKKLYEIVKE LPEEAISFAT KENDWVEIRC GKAHFSIVGL SPEEFPYFPK
VNEESLIRIE GALLADMIEK TAYAICFDET KYNLNGTFVK ATVEDDKPIL RMVATDGHRL
SIAEKEFHGA VGPEMAKGVI FPKKGIFELK KICEEATTEE LALGFMDNSA VIKKGNTVVV
MRLVDGEFPD YTRVVPVAND KIVTVARDPF LHSLRRMSIL SSEKFKGIRM EINGEQMIIS
SSNPELGEAS EELDAAYSGP PLSIRFNAKY LLDVLAVLNE SEVALVLRDE LSPAIVKPAA
VDGFTAVIMP MRL
|
|---|
| |