| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_2915 |
|---|
| Symbol | |
|---|
| ID | 6365982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter lovleyi SZ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010814 |
|---|
| Strand | - |
|---|
| Start bp | 3124673 |
|---|
| End bp | 3128605 |
|---|
| Gene Length | 3933 bp |
|---|
| Protein Length | 1310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642678328 |
|---|
| Product | cell wall/surface repeat protein |
|---|
| Protein accession | YP_001953142 |
|---|
| Protein GI | 189425965 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02543] Listeria/Bacterioides repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGAC AATTAAAACT GATGCTGGTG CTGCTGTTCT CAACGCTGCT GTTCTGCAGC
CCGGCCTGGT CACTGGACCG CTTTATTGAT CTGAACGACG GCACCATGCT GGATACCAGT
AGCAGCCTGC GCTGGCTGAA GAAGGCCAAC TGTATTCATA CACGTTGGGA TATTGCCGTA
TGGGGTGCAG CCACACTGGC AGCGCCTTCC TGCGGGCTGA CGGATAGATC GGTGGCTGGC
GACTGGCATT TACCCTCCAC TGATGAACTG CAGACCCTGG TTGCGGACAA CTATCGTGCA
GACTCCCTTA CTACAGCAGG TTTTGATAGT GTCCAGAATG AATTATACTG GTCCTCCAGC
AGTTTCGAGG GCACCAATAC CGCCTGGGGC GTGCATATGT ACGATGGCAG TGTGCGAGCC
ACCAGCAAGG AGTTTCCCCT TTACGGGTTG CCTGTTCGTA GCGGACAGTA TTGGTCGTTA
AATCCTTTGG TTATTTTTGG GATAGTTGAC TTTGGCTCTA TGCACGTTGG CTCTGTTTCA
TCGAACCATC AGTTTACCCT GAAAAACAGC GCACTAACCT CGCAGTTGAT CAGTTCAATT
GTCCTGAGCG GCGCCGATCC CGGCCAGTTT GTTCTTTCCA CTGGTGACGT CACACCCTGC
AGTAGTCTCA CATCACTCAC TCTGGCTGCC GGTGCAAGCT GTAACGTGGT GGTAACGGCC
AAACCAACGA GCGCAGGCAG CAAAAGCGCC AACCTGACTT TTATCGCAAA TGGCGCCAGC
ACGGATGCCA CACTGAGCGT TACGGGTGTT GCAGCTGTTA CGTACAACAG CAACGGCAGT
ACCTCGGGCG TTGTACCGAC TGATAGTCAG GGATATCTTT CCGGTGCAAC TGTTACGGTC
CTCGCCAACA GCGGTACGCT GGCAAAGACC GGCTACATCT TTAACGGCTG GAACACGGCA
ACCGATGGCA GCGGCACCAG TTACCAGCCC GGCGCAACCT TCAGCTATGC CGCGCCTGTT
ACGCTCTATG CCAAATGGTC TGTTCCCACA GCTCCGCCAG CCGGTCTGGT CAGTTGGTGG
CGGGGTGAAG GGAACCCAAA CGACACCCAG GGGAGAAACA ACGGCACGTT ACAGGGCGGT
GTTACCTATG TCCCCGGATT GGTGGGGCAG GCCTTTAATT TTGAGGGCAG CACAGCCCAG
TATGTTAGCG TGCCCTCCTC TTCATCCCTG AATATCTACG GCACCCATTC CGTCTCCTTT
TGGGTCAAGC TCACCACGCT GCCTCCTGCC GGTAAAGCGT ACTATGTGGT CAGTAAGTGG
GCCAATGCCG CAGAACACAA GCAGATCAAC ATCAATGCCG ACGGAAAGGT TTTCTACTAC
CTACACGGCA CGACCGCCGG TTCCGGTGTC ACCACAACCG CTGCCCTGCA AACAGGCGTC
TGGACCCATG TTGCGGCAAC CTATGATGGC GCAAATATGA AGATCTATAT CAACGGGGCA
CTGAATGCCG GCGTGTCTGC CAGCAACGAT GTTTGGGACA GCAGCGGCAC CTTGTACCTG
GGCTACAATC CTCTGATCGC AGCCAGCTAT TCCGGTGCCA ATTTCAACGG GCAGCTTGAT
GAGCTGGGCT GGTTCAACAG CGCCCTGTCC GCCACAGAGA TAGCAAACAT CTACAATGCC
GGCAGCGCCG GTTGGGCGTT GCCCCGCTTT ATTGATCTGA ACGATGGCAC CATGCTGGAC
ACCAGCAGCA GCCTGCGCTG GTTAAAAAAT GCCGGTTGTT TGGGGACGCA GAAGTGGGAT
GCAGCTATCT CATCTGCAGC TAGCCTGGCA GCGCCTGCCT GCGGGTTGAC GGATGGAACA
ATGGCCGGTG ACTGGCACCT GCCCACCATT GAAGAGCTGC AAACCCTGGT TGCTGCACCG
GACAGCCTCC GCTACGACAC ACTTAATGCA GCAGGGTTTG CTGATGTTCA GGCTTATTGG
TACTGGTCCT CCAGTTCCTA CATAAATAAT TCGAATTTGG CCTGGGACGT GAAATTAACC
GACGGCAACT CGTATTGCGA CCCCAAGTTC AACGCTTCCC GTGTTTGGCC TGTGCGCTCC
GGACAGTACT GGTTATTGGA TTCTTTGGTT ATTTCAGGAA ACTCTGATTT CGGGAGTGTG
CCTGTCGGCT CTACATCATC CGGCCATCCG TTTACGTTGA AAAACAACGG TGCAAATCCG
CTGTCTGTTA CTTCAATCTC CTTAAGCGGA ACGGATTCCG GGCAGTTTAC GCTTGCCACT
GGTGGAACAA ACCCCTGCAG CAGCCTTACC TCGCTCACTC TGGCCGGCGG TGCAGGTTGT
ACCGTGCTGA TCAGTGCCAA ACCAACAACC ATTAGCAGCA AAAGCGCCAA CCTGACCGTT
ACTTCAGCTG GACTGAGTCT GAACGTCCCG TTGAGCGCCA CCGGCGCAGC GTTGTCGGTA
ACCTACAACG GCAATGGCAA CAGCAGCGGC AGTGTGCCAC TTGACAGCAC CGGCTATGCC
CTGAACGCCA CAGCTACGGT TTTGGATAAC AGCGGCGTAC TGGCAAAAAG CGGCTACGCC
TTTAATGGCT GGAACACAGC TGCTGACGGC AGCGGCGTCA GCTATCAGCC CGGCGCAACC
TTCAGCATTG CCGCACCAAC TATCCTGTAC GCAAAGTGGA CACCTCCCAT TGCGCCACCA
TCAGGGCTGG TCTCCTGGTG GCGCGGTGAA AATAACGGGC TGGATGCCCT GGGGGCAAAC
AACGGCACAC TTCACAGTGC CTCAAGTTTT GCCTTTGCAA CCGGCAAGGT CGGCCAGGCC
TTCAGCTTCA GCGGAGCTGC CACTGAATAC GTTGATGCGC CCAGCAGTGC CTCACTTAAC
TTTGGCACCA ACGACTTTGC CATTGCCACC TGGATCAAGA CAACCCTTCC ATCCGCCCAA
TATACCTGGA AACGTCTGGT CACCAAGCGT GCAACCAGCG GTAACTGGTA TTCACTGGCA
CTTAACGGCC CTGTTGCCGG TGCTGTAACC TTTGAAATAG CCGCCAGTGT CAGCATGTCG
TCCAATGTGG CCGTGAATGA CGGGAAATGG CACCATATTG CCGTCAGCAG AGATCCGGTG
GGTACTTCGT CCCGGAAATA TCGCATGTAC CTTGACGGGG TTGAGAATAG TTCCATGATA
GATAGCGGCT GGAATCTGGA TAACAGTGGC CCGCTGGAGA TGGGTAAATG GGCTGCCGAA
TCCAATGGTG GCATTTACTC AGGCCTGATG GATGAAGTGC AGATCTTTAA CCGTTCCCTG
AGCGCCACTG AAATCCAGAG CATCTACAAT GCCGGAGCAG CCGGTCTGGC ATTGACGCCA
ACCGTTACCG GCATCTCACC ATCCAGCGGC TTTGCTTCCG GCGGTACCTC AGTCACCATC
AACGGTACCA ATTTCAGCGG GGCCACTGCC GTTAAGTTTG GTGCAACAGA TGCTGCAAGT
TTCTCTACTG GTTCAGATAC CCAGGTTACT GCCACATCGC CTGCCGGTCT GGTCGGACAG
ACCGTGGATG TTACCGTCAC CACACCTGGC GGCACCAGCG CCACCAGCAG CGCAGATCAG
TTCAGCTATA TCCTACAGTA TCAGGCTCAA AACCAGAGCA CCAATCCATA CACTCCCTAC
ACCACCCTTG CCGAAGCGGT CTCAAGCGCA TCAGCCGGGC ATGAGATCCG GGCCTATGGC
AGTCAGTTTG ATGGAGCCTT GAGTCTTGTC AGGGATATCA TCCTGAATGG CGGCTACAAC
ATGGCATTCA GTGCCAAGGA CAGCCTGCCC ACCACCCTGA ACGGCAGCCT GACCGTGACA
GGTGGTACTG CCAGGGTGGA CAGCGTTACC GTCAAAGGTG TTTTGACTAT CGGCAACGGC
AGCCTGCAGG CAAGCGGTCT GGTGGTGCAG TAG
|
|---|
| Protein sequence | MLRQLKLMLV LLFSTLLFCS PAWSLDRFID LNDGTMLDTS SSLRWLKKAN CIHTRWDIAV
WGAATLAAPS CGLTDRSVAG DWHLPSTDEL QTLVADNYRA DSLTTAGFDS VQNELYWSSS
SFEGTNTAWG VHMYDGSVRA TSKEFPLYGL PVRSGQYWSL NPLVIFGIVD FGSMHVGSVS
SNHQFTLKNS ALTSQLISSI VLSGADPGQF VLSTGDVTPC SSLTSLTLAA GASCNVVVTA
KPTSAGSKSA NLTFIANGAS TDATLSVTGV AAVTYNSNGS TSGVVPTDSQ GYLSGATVTV
LANSGTLAKT GYIFNGWNTA TDGSGTSYQP GATFSYAAPV TLYAKWSVPT APPAGLVSWW
RGEGNPNDTQ GRNNGTLQGG VTYVPGLVGQ AFNFEGSTAQ YVSVPSSSSL NIYGTHSVSF
WVKLTTLPPA GKAYYVVSKW ANAAEHKQIN INADGKVFYY LHGTTAGSGV TTTAALQTGV
WTHVAATYDG ANMKIYINGA LNAGVSASND VWDSSGTLYL GYNPLIAASY SGANFNGQLD
ELGWFNSALS ATEIANIYNA GSAGWALPRF IDLNDGTMLD TSSSLRWLKN AGCLGTQKWD
AAISSAASLA APACGLTDGT MAGDWHLPTI EELQTLVAAP DSLRYDTLNA AGFADVQAYW
YWSSSSYINN SNLAWDVKLT DGNSYCDPKF NASRVWPVRS GQYWLLDSLV ISGNSDFGSV
PVGSTSSGHP FTLKNNGANP LSVTSISLSG TDSGQFTLAT GGTNPCSSLT SLTLAGGAGC
TVLISAKPTT ISSKSANLTV TSAGLSLNVP LSATGAALSV TYNGNGNSSG SVPLDSTGYA
LNATATVLDN SGVLAKSGYA FNGWNTAADG SGVSYQPGAT FSIAAPTILY AKWTPPIAPP
SGLVSWWRGE NNGLDALGAN NGTLHSASSF AFATGKVGQA FSFSGAATEY VDAPSSASLN
FGTNDFAIAT WIKTTLPSAQ YTWKRLVTKR ATSGNWYSLA LNGPVAGAVT FEIAASVSMS
SNVAVNDGKW HHIAVSRDPV GTSSRKYRMY LDGVENSSMI DSGWNLDNSG PLEMGKWAAE
SNGGIYSGLM DEVQIFNRSL SATEIQSIYN AGAAGLALTP TVTGISPSSG FASGGTSVTI
NGTNFSGATA VKFGATDAAS FSTGSDTQVT ATSPAGLVGQ TVDVTVTTPG GTSATSSADQ
FSYILQYQAQ NQSTNPYTPY TTLAEAVSSA SAGHEIRAYG SQFDGALSLV RDIILNGGYN
MAFSAKDSLP TTLNGSLTVT GGTARVDSVT VKGVLTIGNG SLQASGLVVQ
|
|---|
| |