| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_0389 |
|---|
| Symbol | |
|---|
| ID | 6366077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter lovleyi SZ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010814 |
|---|
| Strand | + |
|---|
| Start bp | 365845 |
|---|
| End bp | 367815 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642675781 |
|---|
| Product | penicillin-binding protein, 1A family |
|---|
| Protein accession | YP_001950637 |
|---|
| Protein GI | 189423460 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGAGTA GTCTGTTTCA GTGTTGGGCC ATCACCTTCA CCTGTCTGGC TGTCTTTGGG
GGCTCATCAG CGCTGGCCCA GGAACCGATT GCCGCCTACC CGATCCTGCC GACCGGCTAC
CATTCCATCA AGGTCTTTGA CAGCCAGAGC CGTTTTGTCG GCCGGCTGCT GCCTGAAAAA
CGCTACTGGG TCAGCATTGA CCGGATTCCC CTCTTTCTGC AAAAGGCGAT TGTTGCGGTT
GAGGATGCCC GCTTTTATGA ACATGGCGGC GTTGATCTAC GCGGTATCGC CCGGGCTGCC
GTCAAAAACG TGGTCAGGGG GCGACTGGCT GAAGGCGGTT CCACCATCAC TCAGCAGTTG
ATCAAGAATA AATATCTCAG CAGCGAAAAG ACCCTTGATC GCAAGGTCAA CGAAGGGCTG
ATGGCGCTTG AGTTTGAAAA GAAGTACACC AAGAAGCAGA TCCTGGAGAT GTACCTGAAC
GAGATCTACT ATGGCAATGG CGCCTGGGGC ATTGCCCAGG CTGCCCGGAT CTATTTTGAC
AAGAGTCCTG AAGAACTGAC CGATATTGAG TGTTCATTCC TGGCCGGCAT TCCCAAAAAC
CCCGGCCGCT ACAACCCGCT GGGCAAACCT GCCGATGTGG CCAGACGGCG TTCGATTGTG
CTGCAAAGGA TGGTTGATGT GGGGGTGCTG TCCAGCAGCC AGCTGCGCCA GCAGATCAGC
CACACGGCGG CACCGGTTCC ACCCAATCGC GCCCCCTGGT ATCTGGGGCT GGTACAGTCA
AAGCTGGTTG AACGTTATGG TCCGGCGGTT TTTGAGCAGG GTGGGCTTGA GGTCACCACA
GCCATGGACC TGGGGCTGCA GCTCAAGGCA GAGCAGATTG TGCATGACAG TGTGGTCAAG
CTGTCCCCCC AGCTACAGGG GGCGTTGGTT GCACTGGAAC CGGCTACCGG AAACCTGCTG
GCAGCTGTTG GCGGCACCAG CTATGTGAAG GGTGGTTTTA ACCGGGCATT GCAGGCCAAA
CGTCAACCCG GTTCGGCCAT CAAGCCGTTG ATCTATGCGG CCGCCCTGGA ACAGGGGGTG
ACCGCAGCAA GCCTCTGGAA TGATGCGGCA GTCAGCTACC CGCAAGGTAA CGGTGAAAAC
TGGACCCCCC GCAATTATGA CGGCAAGGCC CATGGCACCA TGACCCTGCG CCAGGCCTTG
GCAAGCTCAA ACAACGTGAT TGCGGTCAAA CTGCTGGAGA CCATCGGTAT CCCAGCCTTT
ACGGAGCTTG CTGCGAAAAA CGGACTGGCC CTGCATGGCA ACAATCTTTC ACTGGCACTG
GGTACCGAAG AGGTTACCCT CCATGATCTG GTACTGGCCT ACGCACCGTT TGCAACCGGC
GGTGTGCGTA CCGAACCGCG CTCCATCCTG CGGATCTACG AGACCTACCG CAAAAACTGG
TTTGAAAACA CAACCGGCAG CAGTCAGGCC CTCTCACCGG CCAACGCCTT CATTACCACC
AGCATGCTTA AGGATGTCTT GACCAGCGGC ACTGCCAAAG GGCTGAAAAC GTTCAGCCAG
AAATACCCGG CAGCCGGCAA GACCGGCACC ACCAACGACT ACCACGATGC CTGGTTTGTC
GGTTATACCC CCCATCTGGT GACAGGTGTC TGGGTCGGCC ATGACCAGCC AAGGTCCGGC
GGCAAAGGTT TTACCGGAGG GGCCGTGGCT GCTCCGATCT GGGAACGGTT CATGCGGCAG
GCCCTGGCCG GTAAGCCAGC GGATGATTTT ACACGGCCTG ATTCGGTCGT GTCGGTCAGC
GTTGACCCTG TCAACGCCTT ACTGGCGACA CCGGCCTGCC CTGCCAAGCG GGAGGAATTT
TTTGTCAGCG GTACCGAGCC GGATGACTAC TGTCCCATGC ATGGCGGTGA ACCTGCCGCC
GCTCCGGCAG CCACACCACC AGCGCCTCCA GCCCCTGCCT CCATACCCTA A
|
|---|
| Protein sequence | MQSSLFQCWA ITFTCLAVFG GSSALAQEPI AAYPILPTGY HSIKVFDSQS RFVGRLLPEK
RYWVSIDRIP LFLQKAIVAV EDARFYEHGG VDLRGIARAA VKNVVRGRLA EGGSTITQQL
IKNKYLSSEK TLDRKVNEGL MALEFEKKYT KKQILEMYLN EIYYGNGAWG IAQAARIYFD
KSPEELTDIE CSFLAGIPKN PGRYNPLGKP ADVARRRSIV LQRMVDVGVL SSSQLRQQIS
HTAAPVPPNR APWYLGLVQS KLVERYGPAV FEQGGLEVTT AMDLGLQLKA EQIVHDSVVK
LSPQLQGALV ALEPATGNLL AAVGGTSYVK GGFNRALQAK RQPGSAIKPL IYAAALEQGV
TAASLWNDAA VSYPQGNGEN WTPRNYDGKA HGTMTLRQAL ASSNNVIAVK LLETIGIPAF
TELAAKNGLA LHGNNLSLAL GTEEVTLHDL VLAYAPFATG GVRTEPRSIL RIYETYRKNW
FENTTGSSQA LSPANAFITT SMLKDVLTSG TAKGLKTFSQ KYPAAGKTGT TNDYHDAWFV
GYTPHLVTGV WVGHDQPRSG GKGFTGGAVA APIWERFMRQ ALAGKPADDF TRPDSVVSVS
VDPVNALLAT PACPAKREEF FVSGTEPDDY CPMHGGEPAA APAATPPAPP APASIP
|
|---|
| |