| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_2917 |
|---|
| Symbol | rpsA |
|---|
| ID | 6976351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011365 |
|---|
| Strand | + |
|---|
| Start bp | 3194500 |
|---|
| End bp | 3196215 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643392426 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_002277263 |
|---|
| Protein GI | 209545034 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.371234 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.0728232 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCAG CCACCTTACA GTCCTCCACC GATCATTTCG GCGGCGAGGA TTTCGCGACC
CTTCTTGACG AGACCCTGGG CCGCGACACC GCATTCGACG GTTCGGTCGT CACCGGCCGC
GTCGTGCGCC TGACCGACGA ATTCGCCATC GTCGATGTCG GCCTCAAGAG CGAAGGGCGC
GTGGCGCTCA AGGAATTCGG CCCGCCGGGC GCCAGCCCCG ACGTCAAGCC GGGCGACGTG
ATCGAACTGT TCGTCGAGCG GTACGAGGAT CGTGACGGCT CCATCGTCCT GTCGCGCGAG
AAGGCGCGGC GCGAGGAAGC CTGGACGAAC CTGGAAAAGG CGTTCGAGGG CAACCAGCGC
GTCAACGGCA CGATCTATGG CCGCGTGAAG GGTGGCTTCA CCGTCGATCT GGGCGGCGCC
ATGGCCTTCC TGCCGGGCAG CCAGGTCGAT ATCCGCCCCG TGCGCGACGT CACCCCGCTG
ATGGGCGTGC CGCAGCCGTT CCAGATCCTG AAGATGGACC GCGCCCGCGG CAACATCGTC
GTCTCGCGCC GCGCGGTGCT GGAAGAGACG CGTGCCGAGC AGCGCAGCGA ACTGATCCAG
GGCCTGAAGG AAGGCATGAT CCTGGACGGC GTGGTCAAGA ACATCACCGA CTACGGTGCG
TTCGTCGATC TGGGCGGCGT GGACGGCCTG CTGCATGTCA CCGACATCGC CTGGAAGCGC
ATCAACCACC CGTCCGAGGC CCTGCAGATC GGCCAGCCGG TCCGCGTGCA GGTCATCCGC
TTCAACCCGG ACACGCAGCG CATCTCGCTG GGCATGAAGC AGCTCGAGGC CGATCCGTGG
GAGAACGTGG CGATCAAGTA TCCGCCGGGT GCCCGCTATT CCGGTCGCGT CACCAACATC
ACCGACTACG GCGCGTTCGT CGAGCTGGAG CCGGGGGTCG AGGGCCTGGT GCACGTTTCC
GAAATGTCCT GGACGAAGAA GAACGTCCAT CCGGGCAAGA TCGTCGCGAC CTCGCAGGAA
GTCGACGTCA TGGTCCTGGA CGTGGACAGC GGCAAGCGCC GTATCTCGCT GGGCCTGAAG
CAGGTGCAGC GCAACCCGTG GGAGCAGTTC GCCGAAGAGC ACAAGATCGG CTCGACGGTC
GAGGGCGAGA TCCGCAACAT CACCGAGTTC GGCCTGTTCA TCGGCCTGTC CGCGGACATC
GACGGCATGG TCCACATGTC CGACCTGTCG TGGGACGAGC CGGGCGAGGT CGCCATGACC
CATTACGAAA AGGGTCAGGT CGTCCAGGCC AAGGTGCTGG ATGTCGATGT CGAGAAGGAA
CGCATCTCGC TGGGCATCAA GCAGCTGCAT GAAGATCCGG CCGCCGACGC GCTGGGCAAG
GTGCAGAAGG GTGCGGTCGT CACCTGCATC GTGACCGCCG TCCAGTCGAA CGGCATCGAG
GTCAAGGTCG ACGACGTGCT GACCGGCTTC ATCCGCCGCG CCGAACTGGC CCGCGACAAG
GCCGACCAGC GTCCGGAGCG TTTCGCCGTG GGCGAGCGCG TCGATGCGAA GATCGTCTCG
GTGGACCGTG CGGCCCGCAA GCTGGCCCTG ACCATCCGCG GCCGCGAGGT CGAGGAAGAC
AAGCAGGCCA TCAACGAGTA CGGCTCGTCC GACAGCGGTG CCTCGCTGGG CGACATCCTG
GGTGCCGCGA TCCGTCGCCG CAACGCCGAG GGCTGA
|
|---|
| Protein sequence | MASATLQSST DHFGGEDFAT LLDETLGRDT AFDGSVVTGR VVRLTDEFAI VDVGLKSEGR
VALKEFGPPG ASPDVKPGDV IELFVERYED RDGSIVLSRE KARREEAWTN LEKAFEGNQR
VNGTIYGRVK GGFTVDLGGA MAFLPGSQVD IRPVRDVTPL MGVPQPFQIL KMDRARGNIV
VSRRAVLEET RAEQRSELIQ GLKEGMILDG VVKNITDYGA FVDLGGVDGL LHVTDIAWKR
INHPSEALQI GQPVRVQVIR FNPDTQRISL GMKQLEADPW ENVAIKYPPG ARYSGRVTNI
TDYGAFVELE PGVEGLVHVS EMSWTKKNVH PGKIVATSQE VDVMVLDVDS GKRRISLGLK
QVQRNPWEQF AEEHKIGSTV EGEIRNITEF GLFIGLSADI DGMVHMSDLS WDEPGEVAMT
HYEKGQVVQA KVLDVDVEKE RISLGIKQLH EDPAADALGK VQKGAVVTCI VTAVQSNGIE
VKVDDVLTGF IRRAELARDK ADQRPERFAV GERVDAKIVS VDRAARKLAL TIRGREVEED
KQAINEYGSS DSGASLGDIL GAAIRRRNAE G
|
|---|
| |