| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_2239 |
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| Symbol | |
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| ID | 6975668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011365 |
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| Strand | + |
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| Start bp | 2482664 |
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| End bp | 2485234 |
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| Gene Length | 2571 bp |
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| Protein Length | 856 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643391766 |
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| Product | DNA ligase D |
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| Protein accession | YP_002276609 |
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| Protein GI | 209544380 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.839838 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTGG ATACCTATCG CAGCAAGCGC GATTTCAAGG CGACGCCCGA GCCCGAGGGT
GCCGAGGCGG CGGAAAAGCC GGATACCGGC GCGGGCCATC TGTTCGTCAT CCAGAAACAT
GCGGCACACC GCCTGCATTA CGACCTGCGG CTGGAAATGG ATGGCGTGCT GAAGAGCTGG
GCGGTGACGC GCGGCCCCAG CCTGAACCCG GGCGACAAGC GCCTGGCCGT GCAGGTCGAG
GACCACCCGC TGGATTACGG CACGTTCGAG GGCACGATCC CGAAGGGGCA GTATGGCGGC
GGCACGGTCA TGCTCTGGGA CAAGGGCACG TGGACGCCGC TGCACGATCC GGTCCGGGGC
CTCGCCAAGG GGCATCTCGA TTTCGAACTG CGGGGCGAAA AGCTTCACGG ACGCTGGAAC
CTGGTGCGGA TGGACGGACA CCGCGAGGGA ACGCATGAGA ACTGGCTGCT GATCAAGGCC
GCCGATTCCG ATGCACGGTC GAAGAACGAT GCCGATATCC TCGAAGAGCG GCCGGAATCC
GTAAAGACCG GCCGTGCGAT GGACGACATC GCGGCCGGTG CGCCAGGGAA GGACAGGGTC
GGGAAGGCGG CGGCCCAAAA AGCCGTGACG AAGAAAGCCG CGATACCGAA GGACGCGCCG
CAGGCGGACG CGGCCGCGAC AGGCGCCGCA CCCTGCGCGG GGGCGAAGCC CGGCCCGTTG
CCATCCTTCG TCGAGCCCGA ACTGGCCACC CTGGTGCGCG CGGCCCCCAC CGGCCCGCAA
TGGCTGCACG AGGTCAAGTT CGACGGCTAC CGCCTGCTGG CGCGGATCGA AGCCGGACGG
GTCGTGCTGC TGACCCGCAC GGGCCTGGAC TGGACCGCCC GGTTCGGCGA CCAGATCAGT
GCCGCGCTGG CGTCCCTGCC GGTGCGGACG GCGCTGATCG ACGGCGAACT GGTGGTGGAA
ACCGCAGGCG GGACCTCGGA TTTTTCCGCT CTCCAGGCCG ATCTCAGCGC CGGCCGCACC
GACCGCTTCA TCTTCTACGT CTTCGATCTG TTGCATCTGG ACGGCTACGA CCTGCGCGAC
GCGACGCTGG AGGCGCGCAA GGGCGCGCTG CACGACCTGG TGCCGGACGA TGCGGCGCGG
CTGCGCTTCA GCGGCCATTT CGACGAGGCC GGGGGGCAGG TGCTGCGCCA TGCCTGCCGC
CTGGGCCTGG AGGGAATCGT CTCCAAGCAG CGGGACGTGC CCTACCGGTC GGGACGGGGC
CGGGACTGGG TGAAATCGAA ATGCGTGGCG CGGCAGGAAT TCGTGATCGG CGGCTACGTG
CCCTCGACCG CCAGCCGGGG GGCGGTCGGC TCGCTGGTCC TTGGGGTCCA GGAAAACGGC
AGGCTGGTCC ATGTCGGCCG GGTCGGGACC GGCTTCACCG CCGCGACGGC GGCGGACCTG
CTCCGGCGCC TGCAACCGCT TGATGTTCCC GACAGTCCCT TCGCCGCTGC CCTGACGGCC
CGCGAGCGAA AGGGGGTGCG CTATGTCCGC CCCGATTGCG TGGCGGAAGT GGAATTCCGC
GCCTGGACCG CCGACGGCCA TCTGCGCCAC GCGGCGTTCC TGGGCCTGCG CGAGGACAAG
CCGGCGGCCG ACATCGTCCG CGAGGTCGAA GCGCCCGACC CCGTATCCTC CGGCCCTTCA
TCCAAACCGG TCAAACCGGT TTCCCCGGAA CCCGCGCCTG CCCGCCCGGC CCGCACCCTG
ACCCATCCCG ACCGGTCCTA CTGGCCGGAT GCCGGCGTGA CCAAGCAGGA CCTGGCCGAT
TATTACGCCG CGATCTGGCC GCGAATGGCG CCCTTCATCA CCGACCGCGC GCTGGCGCTG
TTGCGCTGCC CCAACGGCAT CGCGGGGCCG CGCTTCTTCC AGAAGAACTT ATGGAAGGGC
GCCGGCGGTC ACCTGGTGCC GTTGCGGGAC CCGGAAGGCG ATCCCGGCAC GCCGCTGATC
GGCCTGCGCG ACCGCGACGG GCTGATCGAC CTGGCGCAGG CCGCCGCGCT GGAAATCCAT
CCCTGGGGCG CGTCCGCCCA GGCGTGGGAC CAGCCCGACA TGATCGTGAT GGACCTCGAT
CCCGGCGACG GCGTGCCCTG GTCCATGGTG ATCGAGGCGG CGCGGGAAAT CCGCGCGCGG
CTGGAACGGT CCGGCCTCGC GTCCTTCGTC AAGACGACCG GCGGCAAGGG GCTGCATGTC
GTGGCGCCGC TGAAACCCGG GGCCGACTGG ACGGCGGTCA AGGCCTTCAC CCGGTCCATG
GCCCAGGCGA TGGTGTCGGA CAGCCCGCAG CGTTACGTGG CCACCATCAC CAAATCCAGG
CGCCAGGGCC GTATCCTGGT CGATTACCTG CGCAACCAGC GCGGCGCGAC CGCCGTCGCG
CCCTATTCCC CCCGTGCCCG CCCCGGCGCG CCGGTCGCGA TGCCGCTGGC CTGGAACGAA
CTGGGGCCGG ATATCGGACC CGCGCATTTC ACCATCGGGA CGATCGCCGC CCGACTGGCG
GTCGCGGACC CGTGGGCGGA GATCCGTGAC GCGGCCCGGC CGCTCCGTTA A
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| Protein sequence | MALDTYRSKR DFKATPEPEG AEAAEKPDTG AGHLFVIQKH AAHRLHYDLR LEMDGVLKSW
AVTRGPSLNP GDKRLAVQVE DHPLDYGTFE GTIPKGQYGG GTVMLWDKGT WTPLHDPVRG
LAKGHLDFEL RGEKLHGRWN LVRMDGHREG THENWLLIKA ADSDARSKND ADILEERPES
VKTGRAMDDI AAGAPGKDRV GKAAAQKAVT KKAAIPKDAP QADAAATGAA PCAGAKPGPL
PSFVEPELAT LVRAAPTGPQ WLHEVKFDGY RLLARIEAGR VVLLTRTGLD WTARFGDQIS
AALASLPVRT ALIDGELVVE TAGGTSDFSA LQADLSAGRT DRFIFYVFDL LHLDGYDLRD
ATLEARKGAL HDLVPDDAAR LRFSGHFDEA GGQVLRHACR LGLEGIVSKQ RDVPYRSGRG
RDWVKSKCVA RQEFVIGGYV PSTASRGAVG SLVLGVQENG RLVHVGRVGT GFTAATAADL
LRRLQPLDVP DSPFAAALTA RERKGVRYVR PDCVAEVEFR AWTADGHLRH AAFLGLREDK
PAADIVREVE APDPVSSGPS SKPVKPVSPE PAPARPARTL THPDRSYWPD AGVTKQDLAD
YYAAIWPRMA PFITDRALAL LRCPNGIAGP RFFQKNLWKG AGGHLVPLRD PEGDPGTPLI
GLRDRDGLID LAQAAALEIH PWGASAQAWD QPDMIVMDLD PGDGVPWSMV IEAAREIRAR
LERSGLASFV KTTGGKGLHV VAPLKPGADW TAVKAFTRSM AQAMVSDSPQ RYVATITKSR
RQGRILVDYL RNQRGATAVA PYSPRARPGA PVAMPLAWNE LGPDIGPAHF TIGTIAARLA
VADPWAEIRD AARPLR
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