| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_1825 |
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| Symbol | |
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| ID | 6975247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011365 |
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| Strand | - |
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| Start bp | 2026512 |
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| End bp | 2028503 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643391350 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_002276200 |
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| Protein GI | 209543971 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGCGA ACGCGACCGA TACAATCGAA CTCCCCCCGT CCCGCGCGGC GGACCGGATC
GTGCCGATGA CCGACATCGA CCAGGCGGTC GATGCGGCGC ATGCGGCACT CGGCCGCCGG
CAGCAGGATG ACGGGCACTG GGTGTTCGAG CTGGAGGCCG ATGCCACCAT CCCGGCGGAA
TATGTCTTGC TGGAACATTA CCTGGACCGG ATCGACCCGG CGCTGGAGGA GCGGATCGGC
GTCTATCTGC GCCGCATCCA GGGCGACCAT GGCGGCTGGC CGCTCTATCA CGGCGGCAAG
TTCGACGTCT CGGCCACGGT CAAGGCCTAT TTCGCGCTGA AGGCGATCGG CGACGATATC
GACGCCCCGC ACATGGCGCG CGCCCGCGCG GCGATCCTGG ATCATGGCGG GGCCGAGCGC
AGCAACGTCT TCACCCGCTT CCAGCTTGCC CTGTTCGGCG AGGTCCCGTG GCATGCGACG
CCGGTGATGC CGGTGGAACT GATGCTGCTG CCGCGCAAGG CGTTGTTTTC GGTCTGGAAC
ATGTCCTACT GGTCGCGGAC GGTCATCGCG CCGCTGCTGG TGCTGGCCGC GCTGCGCCCG
CGCGCGATCA ATCCGCGCGA CGTGCATGTG CCCGAACTGT TCGTCACCCC GCCGGACCAG
GTGCGGGACT GGATTCGCGG CCCCTACCGG TCGCAGCTTG GGCGCCTGTT CAAATATGTG
GACATCGCCC TGCGCCCGGC CGAACGGCTG ATCCCCGACG CCACGCGGCA GCGCGCGATC
AAGGCGGCGG TCGATTTCAT CGAACCCCGC CTGAATGGCG AGGACGGGCT GGGCGCGATC
TATCCCGCCA TGGCCAACAC GGTGATGATG TATCGCGCCC TGGGCGTGCC CGACAGCGAC
CCGCGCGCCG CCACGGCGTG GGAGGCCGTG CGCAGGCTGC TGGTCGAACT GGACGGCGAG
GCCTATTGCC AGCCCTGCGT CTCGCCGATC TGGGACACCG GCCTGGCCGG CCATGCGATG
ATCGAGGCCG CGTCCGGCCC CGAGGGCATC CGCCCCGAGG ACACGAAGAA GAAGCTGGCC
GCCGCCGCCG AATGGCTGCG CGAGCGCCAG ATCCTGAACG TGAAGGGCGA CTGGGCGATC
AACTGCCCCG ACGTGCCCCC CGGCGGCTGG GCCTTCCAGT ACAACAACGA TTACTACCCC
GACGTGGACG ACACGGCAGT GGTCGGCATG CTGCTGCACC GCGAGGGCGA CCCCGCGAAT
GACGAGGCGC TGGAGCGCGC GCGCCAGTGG ATCATCGGGA TGCAGAGCAG CAATGGCGGC
TGGGGCGCGT TCGATATCGA CAACAACCTC GATTTCCTGA ACCATATTCC CTTCGCCGAC
CACGGTGCGC TGCTGGACCC GCCGACGGCC GACGTGACGG CGCGCTGCAT CTCGTTCCTG
GCGCAGCTCG GCCATCCCGA GGACCGGCCG GTGATCGAAC GCGGCATCGC CTACCTGCGC
ACGGACCAGG AACGGGAAGG GTGCTGGTTC GGCCGCTGGG GCACCAATTA CATCTACGGC
ACCTGGTCGG TGCTGTGCGC CTATAACGCC GCCGGCGTGG CGCATGACGA CCCGTCGGTC
GTGCGCGCGG TGGACTGGCT GCGTTCGGTC CAGCGCGAGG ATGGCGGCTG GGGCGAGGAT
TGCGCGTCGT ACGAAGGCGC CACGCCGGGC ATCTATACCG AAAGCCTGCC GTCGCAGACC
GCCTGGGCGG TGCTGGGCCT GATGGCGGTG GGCCTGCGCG ACGACCCGGC GGTGATGCGC
GGCATGGCCT ACCTGACCCG CACGCAGAAG GATGACGGCG AATGGGACGA AGAACCCTAT
AACGCCGTCG GTTTCCCCAA GGTCTTCTAC CTGCGCTATC ACGGATACCG TCAGTTCTTT
CCGCTGCTGG CCCTGTCGCG CTACCGCAAC CTGGCGTCCA GCAACAGCCG CCACGTCGCG
TTCGGCTTCT GA
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| Protein sequence | MMANATDTIE LPPSRAADRI VPMTDIDQAV DAAHAALGRR QQDDGHWVFE LEADATIPAE
YVLLEHYLDR IDPALEERIG VYLRRIQGDH GGWPLYHGGK FDVSATVKAY FALKAIGDDI
DAPHMARARA AILDHGGAER SNVFTRFQLA LFGEVPWHAT PVMPVELMLL PRKALFSVWN
MSYWSRTVIA PLLVLAALRP RAINPRDVHV PELFVTPPDQ VRDWIRGPYR SQLGRLFKYV
DIALRPAERL IPDATRQRAI KAAVDFIEPR LNGEDGLGAI YPAMANTVMM YRALGVPDSD
PRAATAWEAV RRLLVELDGE AYCQPCVSPI WDTGLAGHAM IEAASGPEGI RPEDTKKKLA
AAAEWLRERQ ILNVKGDWAI NCPDVPPGGW AFQYNNDYYP DVDDTAVVGM LLHREGDPAN
DEALERARQW IIGMQSSNGG WGAFDIDNNL DFLNHIPFAD HGALLDPPTA DVTARCISFL
AQLGHPEDRP VIERGIAYLR TDQEREGCWF GRWGTNYIYG TWSVLCAYNA AGVAHDDPSV
VRAVDWLRSV QREDGGWGED CASYEGATPG IYTESLPSQT AWAVLGLMAV GLRDDPAVMR
GMAYLTRTQK DDGEWDEEPY NAVGFPKVFY LRYHGYRQFF PLLALSRYRN LASSNSRHVA
FGF
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