Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gdia_0109 |
Symbol | |
ID | 6973500 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gluconacetobacter diazotrophicus PAl 5 |
Kingdom | Bacteria |
Replicon accession | NC_011365 |
Strand | + |
Start bp | 121799 |
End bp | 125269 |
Gene Length | 3471 bp |
Protein Length | 1156 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643389642 |
Product | transcription-repair coupling factor |
Protein accession | YP_002274524 |
Protein GI | 209542295 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.174112 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGGCAC CCGGGACGGA ACACGCCGGC TGGGCCACCA TCTGGGGGGC ACCGGACGGA TTCGACGCCT TTCTGGTGGC ACGCCGGGCC CGCGAGCATG ACGGGCCCGT GCTGCATGTC GCACGGGACG ATGCCGGCAT GGCGCGGATC GGCGAATTGC TGTCCTTCGT CGCCCCCAAT GCCGAAATCC TGCGTTTTCC GTCCTGGGAC TGCCTGCCGT ACGATCGCGT GTCGCCCAAT CCGGCGATCG TCGCCGAACG CGTCGCCACC CTGACGCGGC TGCTGGAACC GGCGACGGCG CCGCGCATCG TGCTGACCAC GGTCGGCGGC CTGGTCCAGC GCGTGGCGCC CCGCGCCGCC TTTCGCGGCC AGTCCCTGAC CCTGGCCGCC GGCGACAGCC TGGACCAGGC CCTGCTGATC GACCTGCTGG TGGCCGCCGG CTACAACCGC ACCGACACGG TGATGGAACC GGGGGAATTC GCCACCCGCG GCGGCATCTT CGATATCTTC CCCTCGGGCG AGGCCGAGCC GGTGCGGCTG GACCTGTTCG GGGACGAGGT CGAGAACATC CGCCGCTTCG ACCCCGCCAC CCAGCGCTCG TCGGACCGGC TGGACCGGTT CGTCATGCGT CCGGTGGCCG ATTTCACCCT GGACCAGGCC AGCATCTCGC GCTTCCGGAC CGGCTGGCGC GACCTGTTCG GGCCGGCGGC GGCCTCCGAT CCGCTTTATG AACATGTGTC GGACGGGCGG CGCCATGCCG GGCTGGAACA TTGGCTGCCG CTGTTCCACG AGCATCTGGA AACGCTGGTC GATTACCTGC CGGGCGTGTC GATCATCCTG GCCCATCAGG TCGAGGACGT CCTGGCCGCG CGGCTGGAGA TGATCGCCGA TCATTTCGAG GCCCGGCGCC AGCCGGTGCG CGAGGGCGAA GTCCCGTACC GCGCGCTGCC GCCCCACCTG ATGTACCTGG ACCGCAAGGG ATGGGACGGA ATCCTGTCCG GCCACCCGGT GATGCTGTTC AGCCCCTTCG CCCGTCCGGA CAATGCCGGG GGCGTGGATG CCGGGGGGCG GCCGGGCATC CTGTTCGCCA GCGTCGCGGG GGGCGGGGCG CGTGAGAACG TGTTCGCGAT GCTGGATACG CAGGTCCGGC AATGGGCCGA GACCGGGCGC CGCGCCTACG TGTCGGCCTG GACCCGGGGA TCGCGCGAGC GGATCGCGAC ATTGCTGCGC GAGCACGGCA TGCGGGTCGA GACGTTCGAT GGCTGGGCCC GCGCGCAGGA TCTGCCGCCC GGCACCGTGG GCCTGCTGAC GCTGGGCCTG GAACGTGGCT TCATCGCCGA CAACCTGGCC TTCGTGTCCG AGCAGGACCT GCTGGGCGAG CGGATTTCCC GCCCGCCGCG CCGGCGCAAG AAGGCCGACC AGTTCATTGC CGAGGCGTCG GAAATCGCCG AGGGCGACCT GGTGGTCCAT CAGGATTACG GCATCGGCCG CTATGACGGG CTGGAGACGA TCGGCGTCGG CACCGCGCCG CATGACTGCC TGCGCCTGAT CTATGACGGG AACGAGAAAC TGTTCCTGCC GGTCGAAAAT ATCGAACTGC TCAGCCGCTT CGGGTCCGAC CAGGCGGGGG TGGCGCTGGA CAAGCTGGGC GGGGCCTCGT GGCAGAACCG CAAGGCCCGG ATGAAGCAGC GCATCCGCGA CATGGCGGGC GAACTGATCC GCACCGCCGC CCTGCGCGCG TTGCGCGAGG CCCCCAGCAT GACCCCGGCC GAGGGGATGT GGGACGAGTT CTGCGCGCGC TTCCCCTTCG TCGAGACCGA GGACCAGTCC CGCGCCATCG CCGACGTGCT GGAGGACATG GGGTCGGGCC GCCCGATGGA CCGGCTGGTG TGCGGCGATG TGGGCTTCGG CAAGACCGAG GTCGCGCTGC GCGCGGCCTT CGTCGCCGCC CTGTCCGGCG CCCAGGTGGC GGTGGTGGTG CCGACCACGC TGCTGGCGCG ACAGCATTTC CGCACCTTCT CGGCCCGTTT CTCCGGCCTG CCGATCACGG TGGCGCAATT GTCGCGCATG GTCACGCCCA AGGAGGCGAC CGCCGTGCGC AAGGGGCTGG CCGACGGCAC GATCAACATC GTCATCGGCA CCCACGCGCT GCTGGCCAAG GGCGTGCAGT TCGCCGACCT GGAACTGCTG ATCATCGACG AGGAGCAGCA TTTCGGCGTC GCGCACAAGG AGAAGCTGAA GGCGCTGCGC GAGGACGTGC ATGTGCTGAC CCTGTCGGCC ACCCCGCTGC CGCGTACTTT GCAACTGGCC CTGACCGGCG TGCGGGAGAT GAGCCTGATT GCGACCCCGC CCACCGACCG GCTGGCGGTG CGGACCTTCA TCATGCCGTT CGACAGCGTG GTGATCCGCG AGGCGATCCA GCGCGAGCGG TTTCGCGGCG GGCAGATCTT CTGCGTCGTG CCCCGGATCG AGGATCTGGA CCGCATGGCC GCCCGCCTGC AGGACATCGT GCCCGACGCG CGCCTGGTCC AGGCACATGG CCGCCTGACC CCGACCGAGC TGGAACGGGT GATGACCGAA TTCAGCGACG GCAAATACGA CATCCTGCTG TCCACCAACA TCGTGGAAAG CGGGCTGGAC ATGCCGGCGG TGAACACGCT GATCATCCAT CGCGCGGACA TGTTCGGGCT GGGGCAGCTC TATCAGTTGC GCGGCCGCGT CGGGCGCGGC AAGCAGCGGG GCTATGCCTA CCTGACCTGG CCGCAGACCC ATGTCCTGTC GGCCGCCGCC GAAAAGCGGC TGGAGGTCAT GCAGACCCTG GATACGCTGG GGGCGGGCTT TACCCTGGCG TCGCACGACC TGGACCTGCG CGGGGCGGGC AACCTGCTGG GCGACGAGCA ATCGGGCCAT ATCCGCGAGG TCGGGATCGA GCTGTACCAG CAGATGCTGG AGGACGCGGT CGCGGAACTG CGGGTCGAAA AGGGCCGGCG CAAGGCGCAG GACCGCGACT GGACCCCGAA CATCATCCTG GGCCTGCCGG TTCTGATCCC CGAAACCTAC GTGCCCGACC TGCCGGTCCG GCTGGGCCTG TACCGGCGCA TCGCCGGGCT GGCCAATGAC GCCGAAATCG AGGCGATGGA GGCGGAACTG GTCGACCGGT TCGGGACGAT GCCGGACGAG GTGCGCAACC TGCTGGACGT CGTCGCGATC AAGCGCCTGT GCCGCGAGGC CGGGGTCGAG CGGCTGGAGG CCGGGCCGAA GGGCATGGTG ATCCAGTTCC GCGGTAACAG TTTCGCCAAC CCGGGTGGAT TGGTGACCTG GATCGCGGCA CATAAGGAAG GCAATGTCCG CCTGCGCCCG GACCACAAGC TGGCCCTGGT GCGGGAGATG ACGAACGCGC AGCGCATTCG CCTGGCCAAG GACACGGTCC AGACGCTGGG CCGCCTCGCG GGTCAGGAGA AGGCGGCCTG A
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Protein sequence | MRAPGTEHAG WATIWGAPDG FDAFLVARRA REHDGPVLHV ARDDAGMARI GELLSFVAPN AEILRFPSWD CLPYDRVSPN PAIVAERVAT LTRLLEPATA PRIVLTTVGG LVQRVAPRAA FRGQSLTLAA GDSLDQALLI DLLVAAGYNR TDTVMEPGEF ATRGGIFDIF PSGEAEPVRL DLFGDEVENI RRFDPATQRS SDRLDRFVMR PVADFTLDQA SISRFRTGWR DLFGPAAASD PLYEHVSDGR RHAGLEHWLP LFHEHLETLV DYLPGVSIIL AHQVEDVLAA RLEMIADHFE ARRQPVREGE VPYRALPPHL MYLDRKGWDG ILSGHPVMLF SPFARPDNAG GVDAGGRPGI LFASVAGGGA RENVFAMLDT QVRQWAETGR RAYVSAWTRG SRERIATLLR EHGMRVETFD GWARAQDLPP GTVGLLTLGL ERGFIADNLA FVSEQDLLGE RISRPPRRRK KADQFIAEAS EIAEGDLVVH QDYGIGRYDG LETIGVGTAP HDCLRLIYDG NEKLFLPVEN IELLSRFGSD QAGVALDKLG GASWQNRKAR MKQRIRDMAG ELIRTAALRA LREAPSMTPA EGMWDEFCAR FPFVETEDQS RAIADVLEDM GSGRPMDRLV CGDVGFGKTE VALRAAFVAA LSGAQVAVVV PTTLLARQHF RTFSARFSGL PITVAQLSRM VTPKEATAVR KGLADGTINI VIGTHALLAK GVQFADLELL IIDEEQHFGV AHKEKLKALR EDVHVLTLSA TPLPRTLQLA LTGVREMSLI ATPPTDRLAV RTFIMPFDSV VIREAIQRER FRGGQIFCVV PRIEDLDRMA ARLQDIVPDA RLVQAHGRLT PTELERVMTE FSDGKYDILL STNIVESGLD MPAVNTLIIH RADMFGLGQL YQLRGRVGRG KQRGYAYLTW PQTHVLSAAA EKRLEVMQTL DTLGAGFTLA SHDLDLRGAG NLLGDEQSGH IREVGIELYQ QMLEDAVAEL RVEKGRRKAQ DRDWTPNIIL GLPVLIPETY VPDLPVRLGL YRRIAGLAND AEIEAMEAEL VDRFGTMPDE VRNLLDVVAI KRLCREAGVE RLEAGPKGMV IQFRGNSFAN PGGLVTWIAA HKEGNVRLRP DHKLALVREM TNAQRIRLAK DTVQTLGRLA GQEKAA
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