Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_4059 |
Symbol | |
ID | 6780922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | - |
Start bp | 4612697 |
End bp | 4614310 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642770052 |
Product | 60 kDa inner membrane insertion protein |
Protein accession | YP_002140845 |
Protein GI | 197120418 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.082021 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAAC GTCTCATCAT AGCGGTACTC CTCTCCATCG GGGTCCTCTA CGCTTACTCT TTCATTTTCC CGACGCCCAA ACCGCTAACT GCGCCAGGCG CCAAACAGGC AGCCATGAGC TCCGCCTCCG CTCCTGCTTT ACCGGCGGCA GTTGCACCGA CCGCAGGCAC CGCGCCCCTC GCTGCGCCCG CACCCCAGGC GGGGCAGGCG CCAGCTGTTG CCAAGGATGT TACCGTCGAC ACCGATCTCT ACACCGCCGT GTTCTCCACC CAGGGGGGCG GTCTCAAAAA GTTCGTCCTC AAGAAGTACA AGGAGACTGT CGGCCCCCAG GGAAAGGACA TCGTTCTGGT CAACGAGACC GCAGCCAACC GCTATGCGCT TCTCAGCGAC TCCCGGGAAT TCGGCCTCTC CCCTGACGCC CTTTACAGCG CAAGCACCGG TGAGGTCAAG GTCACGAACG GCGGCAAGGG ATCCCTCGAA TTCACCACCA CCACTTCGCA GGGGATCACC TTCAGGAAGG TCTATACCTT CTCCGGCGAC GCCTACCGTA TCGGCCTTAC CGAGGAAGTA CAAAACGCAG GGAATGTGGC GCTGACCGGG GCCGTGCACC TGCTGCAGAC TTCTCGCGTC GTTGAAGCGA AGAAGGAGGG GAGGTACGAA GTTCATGCAC CCTCGACCCT CAGCGAAGGG AAGGTGAAGG TCGACAAGCT GGACAACCTG CTCAAGAACC CGGTTCAGTA CGGGAAGGAC ATCGCCTGGT CCGCGTTTGC CGATAAGTAC TTCATGGACG GCATCATCGC GGACAAGGGG AGCATCAGCC AGGTTCGCAT CACGCGCCCG GCCAATGACG CCATTCAGCG CGACATCGTT TCGCCCACTG TCACCGTGGC ACCTGGTCAG CGTTCCGCTG TCAATTACGC CGTCTACTAT GGCCCGAAGG ATCTCGACAT CCTGAAGCTG CAGGGTAACC GTCTGGATGA AGTAATAGAC TACGGCTGGT TCGGTCCCAT TGCGAAGCCG CTGGTTCATT CGCTCAAATT CCTTTACAAG TACACCGGCA ACTACGGCAT CGCCATTATC ATCATCACCT TCATCCTGAA ACTTGTCTTC TTCCCGCTCA CCCACAAGAG CTACAAGTCG ATGAAGGACA TGCAGAAGCT GCAGCCCAAG ATGACTGAGC TGAAGGAGAA GTTCAAGAAC GACCGCGACG CCATGAACCG CGCCGTGATG GAACTGTACA AGACCCACAA GGTCAACCCG CTCGGCGGCT GCCTGCCGAT GGTAGTGCAG ATCCCGGTGT TCTTCGGACT CTACCGCGCG CTGATGTACT CCATCGAGCT GCGCCACGCT CCTTTCTATC TCTGGATCAC TGACCTCTCC GCCAAGGATC CGTACTACGT GACCCCGATC ATCATGGGCG TCACCATGTT CATCCAGCAG AAGATGACCC CGACCAACAT GGATCCGGTG CAGGCCAAGA TGATGCTCAT GCTTCCCATC GTCTTCACCT TCATGTTCCT GAACTTCCCG TCCGGCCTCG TCATCTACTG GCTGGTGAAC AACGTGCTGA CCATCGCTCA GCAGATGTAT ATCAACAAAG CCGTAGCAGA CTAA
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Protein sequence | MEKRLIIAVL LSIGVLYAYS FIFPTPKPLT APGAKQAAMS SASAPALPAA VAPTAGTAPL AAPAPQAGQA PAVAKDVTVD TDLYTAVFST QGGGLKKFVL KKYKETVGPQ GKDIVLVNET AANRYALLSD SREFGLSPDA LYSASTGEVK VTNGGKGSLE FTTTTSQGIT FRKVYTFSGD AYRIGLTEEV QNAGNVALTG AVHLLQTSRV VEAKKEGRYE VHAPSTLSEG KVKVDKLDNL LKNPVQYGKD IAWSAFADKY FMDGIIADKG SISQVRITRP ANDAIQRDIV SPTVTVAPGQ RSAVNYAVYY GPKDLDILKL QGNRLDEVID YGWFGPIAKP LVHSLKFLYK YTGNYGIAII IITFILKLVF FPLTHKSYKS MKDMQKLQPK MTELKEKFKN DRDAMNRAVM ELYKTHKVNP LGGCLPMVVQ IPVFFGLYRA LMYSIELRHA PFYLWITDLS AKDPYYVTPI IMGVTMFIQQ KMTPTNMDPV QAKMMLMLPI VFTFMFLNFP SGLVIYWLVN NVLTIAQQMY INKAVAD
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