| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3892 |
|---|
| Symbol | |
|---|
| ID | 6780756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 4429432 |
|---|
| End bp | 4430670 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642769887 |
|---|
| Product | drug resistance transporter, Bcr/CflA subfamily |
|---|
| Protein accession | YP_002140680 |
|---|
| Protein GI | 197120253 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0543814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGTA GCGCTTCCCT TCACCCCTGC GACATGACAA AACGCCAACT GGCCGGGTTC
GTACTGATCC TGGCTGCGCT TACCGCTTTC AGCGCCATGT CCATCGACAT GTATCTCCCC
GCCTTCCCGC AGATGGCGAA GGATCTCGGG GAACCACTCA GCACGGTGCA GCTCTCGGTA
TCTGCTTTCC TTTTCGGGTC CGCCGCGGGG CAGCTCTTTT ACGGGCCGCT CGCCGACCGC
TATGGCAGAC GGGTTCCGCT CCTGGCTGGG CTCGCCCTCT ATGTCGTCTC CTGTCTCGGA
TGCGCCGCTG TGCACAGTGG GGCGGAGCTG TTGTTCTGGC GGGTGCTGAT GGCGCTGGGA
GGGGGAGCCG GGATGGTCAT CTCCCGGGCG GTGGTGCGCG ACCTCTATGA CACCGCCGAG
GCGGCCAGGA TGTTCTCCCT GCTCATGCTG ATCATGGGGG TTGCCCCGAT CCTGGCGCCG
ATAGCAGGCG GCCAGCTGCT CTTGCTTACG GGATGGAGGG GGATTTTCTG GTTCCTGGCT
TTCTTCGGCG TCGTCTCGCT GGCGGGTGCC GCCGTGGGGC TGCCTGAGTC CTTGCCGGCG
GAGAGGCGCC AGCGCCGCAG CCTTGCAGGC ATGGTGAAGG TATACGGTCA CCTGCTGAAA
AACCGGCATT ACCTCCGGTA CGCGGTCGCC ATCGGGTGCG TCGCCGGCAT GAACTTCTCC
TACATCTCCG GCGCCCCCTT CATCTTCATC GAGCTGCACG GCATCTCCCC GCAGCAGTTC
GGGATCCTGT TCGGGGTGAA CGCCTGCGGC CTCATCGGGG CCTCGCAAGT CAACCGCAGG
CTCTTGCGCC GCTTCTCTCC GCAGCAGATA GCGTCCGCGG CATTCCTGGT CAGCGCGGCC
GCAGCGCTTT TGCTCACCGG GGCAGGCGCC ACCGGGGTCG GCGGGTTCCC TGCCCAAGCC
GTCCTCATCT TCATCTGCCT ATGCATGACC GGGCTCTTGT ACCCGAACCT GACCGCGCTG
GCCATGGCGC CTTTCGACAA GGCGGCGGGA AGCGCCTCGG CGCTTTTGGG GACCATCCAG
TACACGCTGG GCGCCTCCGC CGGGGCGCTG GTGGGGGTTT TCCACGACGG GAGCGCCCTC
CCTATGACCG CAGTCATGGC GGTGTGCGGC GCCCTCGGTT TGACGGCGGT GCTGGGTGCG
GGGAGCGCCC CGGATGTCGT ATGTACCAGC GCCGCGTGA
|
|---|
| Protein sequence | MKRSASLHPC DMTKRQLAGF VLILAALTAF SAMSIDMYLP AFPQMAKDLG EPLSTVQLSV
SAFLFGSAAG QLFYGPLADR YGRRVPLLAG LALYVVSCLG CAAVHSGAEL LFWRVLMALG
GGAGMVISRA VVRDLYDTAE AARMFSLLML IMGVAPILAP IAGGQLLLLT GWRGIFWFLA
FFGVVSLAGA AVGLPESLPA ERRQRRSLAG MVKVYGHLLK NRHYLRYAVA IGCVAGMNFS
YISGAPFIFI ELHGISPQQF GILFGVNACG LIGASQVNRR LLRRFSPQQI ASAAFLVSAA
AALLLTGAGA TGVGGFPAQA VLIFICLCMT GLLYPNLTAL AMAPFDKAAG SASALLGTIQ
YTLGASAGAL VGVFHDGSAL PMTAVMAVCG ALGLTAVLGA GSAPDVVCTS AA
|
|---|
| |