| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3748 |
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| Symbol | |
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| ID | 6780612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 4283491 |
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| End bp | 4287843 |
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| Gene Length | 4353 bp |
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| Protein Length | 1450 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642769743 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002140536 |
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| Protein GI | 197120109 |
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| COG category | [N] Cell motility
[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0457] FOG: TPR repeat
[COG3063] Tfp pilus assembly protein PilF
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGCTG ATTCCCGCGC GGATAGCCCG ACCGAGACGT TCGCCGCGGC CCTCGATCTG
CAAAAAAGCG GTCGCAGGGA CGAGGCCGAG CGGCTCTACC GCGCCCTGGC CGCATCGGGG
GGGAAGTTCG CCGCCGACGC CTGCATAAAC CTCGGTGCGC TCCTGGATGA GAGCGGGCGC
GCCGAGGAGG CGCTGGAAAA GTACCGCGAG GCGCTTGCCC TGCGGGAGGG GGACCCGCTC
GCCCTCAACA ACGCCGGTTC CACGCTGTTC AAGCTGGGGC GTTTTCATGA GGCGGCGGAG
CAGTTCCGCC ATGCCCTGGA GCGGGCCCCG GATTCCCTGG AGGCGCAGGT GGCGCTCGGC
GCGGCGCTGC AAAGGGAAGG GGATCTCCCT GCGGCGCTCG CCGTTTTCCG CGATCTGGTG
GCGCGGCGTC CGGATTCCGC CGAAGCGCAC TGGAACCTGG CGCTGGCGCT GCTCTTAGCC
GGGGATTTCC GCGAGGGGTG GGCCGAGTAC CAGTGGCGCT GGCGCAGGGA CTCCTTCACC
TCCCCGAGGC GCGAGCTTGC GGCGCCCGCC TGGGACGGCA CGCCTCTTGA GGGGCGCCGC
ATCCTGGTGC ACGGCGAGCA GGGTTTGGGC GACACCATCC AGTTCGCCCG CTACCTCCCC
ATGGTTGCCG CCGCGGGGGG CGTGGTGGTG GCGGAATGCC AGTCCTCCTC CCTGGTGCCG
CTTTTAGCCG GCATCCCCGG CGTCTCCGAG ACCTGCGTCA TGGGGGAAGC GCATCCCCAC
TTCGACCTCG AGGCGGCGCT CTTGTCGCTC CCCCACCTGT TCGGCACCAC GCTGGAAAGT
GTCCCAAGCG GGGTCCCCTA CCTGGCGCCC CCGGAGGAAC GGATGGCGCC CTGGCGGGAG
AAGGTGGCGG CGGACCTGGG GTTCAAGGTG GGGCTGGTCT GGGCCGGGAA GCCGGTTCCC
GACCCGTTTC GCTCCTGTCC GCTCGCGGCG CTGGCGCCCT TGTTCGACAT CCCGGGCGTG
AGCTTCTATT CGCTCCAGGT AGGGGAGGAG GCCACGCAGG CCAAGGAGTT TCCCTCCCTC
ATCGATTTCA CCCCCTCCAT CGCGGACTTC GGCGATACCT CCGCTCTCAT CGCGCAGCTC
GACCTGGTCG TCTCCATCGA CACCTCCGTG GCCCACTTGG CCGGTGCGCT GGCGAAGCCG
GTCTGGCTGC TGCTCCCCAA GGCGGGCGAC TACCGCTGGC TCACCGAGCG CGAAGATTCC
CCCTGGTACC CGACCATGCG CCTTTTCCGG CAGAAGCTGC AGGGTGAGTG GGGGGAGGTG
ATCGAGCGCG TGAAGGGGGA ACTGGAAGAG GCTGCCTGGG GCTTTTTGGA AAAAGCCGCC
CTGGCGCAGC CGTTCAACGG CCGCAGACAC TGCCTCTGCG GGCTCTTCCT CTCCTATAAA
AAAAGAGAGC GCGAGGCGAC GGTAAGGTAC AGCAAGGCGG CGCAGTTGAT GCCCGGAAGC
TGGGAGCCGC ACTACGCGCT CGCCTGCTCG CTGCAGCAGC TGACGCGACT TGCCGAGGCG
AAGGAGAGTC TTCTGGCAGC ACTCGCCCTG GAGCCGCGGC TTTCCCTCTT GCACGAGGCG
CTCGGCATCC TGTGCCAGAT GCAGGACGAT CCCGAAGGGG CGGCGCGCGC CTACCGGGAG
GCGCTGGCGC TCGACCCGGA CGCGGTGAAG GCACGCTATA ACCTGGCCAC GCTCTGCAAG
GAGAAAGGGC TTGCAGCCCA GGCGCTGGAA GGTTTCCGCG AGGTGGTGCG GCGCGCGCCG
GAGCATGCCG ACGCGCATTG GAACCTGGCC GTGATGCTCC TCATGACCGG GGAGTTCGCC
GAAGGTTGGC GGGAGTTTCC CTGGCGCTTC AAAAAGAGCC TCTTTCCCCC GGCTCGCCGC
TGGGAGGAAC AGCCGCGCTG GGACGGCTCC CCGCTTCTCG GTGCGACCAT CCTGCTCTAC
GGAGAGCAGG GGGCCGGCGA CACGCTGCAG TTCGTGCGCT ACGCCCCGCT GGTGGCGGAG
CGCGGCGGAA GGGTGCTTGT CGAGGTGCAG TCGCGGGGGC TCATCGACGT GGTGGCGACC
GTAGATGGCG TCAGCGGCGT CTTTGCCTGC GGCGAGCCCA TCCCCGCGTT TGAGTGGCAG
GCCTCGCTGA TGGATCTTCC CGGCATCTTC GGCACCGAGG CCGCCACCAT CCCGGCCGCC
GTCCCCTATC TCGGAGTCGA CCCCGGGCGC AGCGACTCGT TGCGGGATCT CTTCGCAGGC
GAAGGGTTGA AGGTCGCGCT GGCATGGCGC GGCAACCCGG CCCACGGCAA CGACGCCAAC
CGCTCGATAC CGCTTGCCAA ACTCGCCCCG CTGGCGGAAG TCCCCGGCGT GAGCTTCTAT
TCCCTGCAAG TGGGGGAGGC CGCGCGGGAG GAGCTTCCCG GCCCCTTTCC GATCGTCGAC
CTGGCACCGA AGATCAAGGA TTTCGCCGAC ACGGCCGCCC TTGCCGGAGA GCTCGACCTG
GTCATCTGCG TTGACACCTC GGTGGCGCAT CTGTGCGGCG CGCTCGGAGT GCCGGTATGG
CTCCTGGTCC CCCTGGTGCC GGACTGGCGC TGGGGCCTTG CCCGCGACGA CTCCCCCTGG
TACCCGACCC TGCGACTTTT CCGGCAAAAG CAGCAGGGAG ATTGGGAGGA GGTGGTGGCG
CGGGTCAAGG AGGCGCTGGC CCGAAAGGCG TCCCCCGCTT CCGTTTCCCC GCAGGCGTTC
CCAGCAGAAT CCCGGGCGCA GGCCGAGATC TGGAACAATC GGGGGTGCGC CGAGGACGGC
GAGGGCTGCC ATCTGGAAGC GGTGGAGAGC TACCGCAAGG CAATCGCCCT CTCCCCCGAT
TTCATGCCCG CCCACTACAA CCTCGGCAAC AGCCTCTTCG CCTTGGGAAG AAGCGGCGAG
GCGGCGGAGA GCTACCGCTG GGCCCTCGCT CTCGATCCCG CCCTGCCGCA GGGGTGGCAC
AACTTAGCGC TTGCCCTCAA GGCGCAGGGG GCCGTCGACG AGGCGTTGCA TGCGCTGAGA
AGGGCGGTGC GGGTAGCACC CGATTACCTG GAGGCGCGGC ATACCCTGGG CCAGCTGCAC
CATGAGCGGG GCGAGCTGGA TGAGGCGATG GCCTCTTTCC GCGAAAACCT CTCCCGCGAT
CCCGGCTACC TCCCCTCCTG GAATGCAATG GGGATCTCGC TGCAGGTGCT GGGGCTCCTG
GAGGAGGCGG TCGATTGCTA CCAAAAGGCG CTCGCCCTGA AGCCGGACTA CCTGCACGCC
CTGAACAACC TGGGTACGGC GAGCAGGTCG CTCGGGCTTT TGGCGCAGGC GAAGAGCTGC
TATGAGAAGG TGCTGGAGCT CGACCCGGAG TACGCCGACG CCCGCTGGAA CCTGGCCCTG
GTGCAGCTGC AACTGGGAGA GTACCGGGAG GGGTGGCAGG GGTACGAGTG GCGCTTCTCC
AAGGTGGATC CCATCCCGAA GCTGGAATTC GCCCGGCCGC TGTGGGACGG CGGGAGCCTC
GAAGGGCGCA CCATACTTCT CACCAGCGAG CAGGGTTTCG GCGACACCTT CCAGTTCGTG
CGTTACGCGA AGCTCCTGGC GCAGGGGGGC GCGACTGTGC TGGTGCAGGC GCAGAGCGAG
GCGATCGCGC CGGTGATCGC CACCGTACCC GGTGTGGCCC GCGTGCTGGT CCGGGGGGAG
CCTCTCCCCG AGTTCGACTG CCACGCCCCC CTGATGAGCC TGCCGCATCT TTGCGGGACG
CTTCTTGCGA GCATTCCCGC CGAGATACCC TACCTTTTCG CCGATCCGGC GCTGGTTAAG
AAGTGGAGCC CGCTCCTCAC CGGTGAGAGG CTCCGGGTGG GGTTGGTCTG GGCGGGGAGG
AAGAGCTACA AGGACGACCT GAAGCGCTCG CTGTCGCTGC CGCTTTTCGC GCCGCTCTCG
AACGTGTCCG GGGCCGATTT CTTCGCCCTC CAGGTGGGTG ACGGGGCGGA GCAGGCGGCC
TCGCCGCCGC CGGGGGTTAC GCTCACCGAC CTCGGGCGCA ACATCAGGAA CTTCGCCGAT
ACCGCCGCGG TGCTTACCCA GCTCGATCTC GTCATCACGG CGGACACCGC GGTGGCCCAT
CTGGCGGGAG GGCTCGGGGT GCCGGCCTGG GTCCTGCTCC CGGTGGGATG CGACTGGCGC
TGGCTCACCG AAAGGGAAGA TTCCCCCTGG TACCCGGGCG CGCGGCTTTT CCGGCAGACG
CGCCGCTGCG ACTGGAACGA GGTGCTGCAA CGCGTCGCCG ACTGTCTGGC TACGGTGGTC
TCAAAGGGGC GGCAACGGAA CAGGGAGAGC TGA
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| Protein sequence | MPADSRADSP TETFAAALDL QKSGRRDEAE RLYRALAASG GKFAADACIN LGALLDESGR
AEEALEKYRE ALALREGDPL ALNNAGSTLF KLGRFHEAAE QFRHALERAP DSLEAQVALG
AALQREGDLP AALAVFRDLV ARRPDSAEAH WNLALALLLA GDFREGWAEY QWRWRRDSFT
SPRRELAAPA WDGTPLEGRR ILVHGEQGLG DTIQFARYLP MVAAAGGVVV AECQSSSLVP
LLAGIPGVSE TCVMGEAHPH FDLEAALLSL PHLFGTTLES VPSGVPYLAP PEERMAPWRE
KVAADLGFKV GLVWAGKPVP DPFRSCPLAA LAPLFDIPGV SFYSLQVGEE ATQAKEFPSL
IDFTPSIADF GDTSALIAQL DLVVSIDTSV AHLAGALAKP VWLLLPKAGD YRWLTEREDS
PWYPTMRLFR QKLQGEWGEV IERVKGELEE AAWGFLEKAA LAQPFNGRRH CLCGLFLSYK
KREREATVRY SKAAQLMPGS WEPHYALACS LQQLTRLAEA KESLLAALAL EPRLSLLHEA
LGILCQMQDD PEGAARAYRE ALALDPDAVK ARYNLATLCK EKGLAAQALE GFREVVRRAP
EHADAHWNLA VMLLMTGEFA EGWREFPWRF KKSLFPPARR WEEQPRWDGS PLLGATILLY
GEQGAGDTLQ FVRYAPLVAE RGGRVLVEVQ SRGLIDVVAT VDGVSGVFAC GEPIPAFEWQ
ASLMDLPGIF GTEAATIPAA VPYLGVDPGR SDSLRDLFAG EGLKVALAWR GNPAHGNDAN
RSIPLAKLAP LAEVPGVSFY SLQVGEAARE ELPGPFPIVD LAPKIKDFAD TAALAGELDL
VICVDTSVAH LCGALGVPVW LLVPLVPDWR WGLARDDSPW YPTLRLFRQK QQGDWEEVVA
RVKEALARKA SPASVSPQAF PAESRAQAEI WNNRGCAEDG EGCHLEAVES YRKAIALSPD
FMPAHYNLGN SLFALGRSGE AAESYRWALA LDPALPQGWH NLALALKAQG AVDEALHALR
RAVRVAPDYL EARHTLGQLH HERGELDEAM ASFRENLSRD PGYLPSWNAM GISLQVLGLL
EEAVDCYQKA LALKPDYLHA LNNLGTASRS LGLLAQAKSC YEKVLELDPE YADARWNLAL
VQLQLGEYRE GWQGYEWRFS KVDPIPKLEF ARPLWDGGSL EGRTILLTSE QGFGDTFQFV
RYAKLLAQGG ATVLVQAQSE AIAPVIATVP GVARVLVRGE PLPEFDCHAP LMSLPHLCGT
LLASIPAEIP YLFADPALVK KWSPLLTGER LRVGLVWAGR KSYKDDLKRS LSLPLFAPLS
NVSGADFFAL QVGDGAEQAA SPPPGVTLTD LGRNIRNFAD TAAVLTQLDL VITADTAVAH
LAGGLGVPAW VLLPVGCDWR WLTEREDSPW YPGARLFRQT RRCDWNEVLQ RVADCLATVV
SKGRQRNRES
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