| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3063 |
|---|
| Symbol | |
|---|
| ID | 6779919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 3550124 |
|---|
| End bp | 3550897 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642769057 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_002139861 |
|---|
| Protein GI | 197119434 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000494154 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAGT TCATCGCTTC ACTGAAGCAC CGAAGCGGCC CAACAAAAGG ACAGCCCCTG
TCGCGTGCAC GGATTCTCAA CGTTCTCCAG GTCTTCAAGA CCATCTGGAA CGATGCCATT
GAGGAGCACC GCTGGAATCT CCCCGACCCG TGCAGGTCGT TGAAGAGGCA CCTCCCGAAG
AAAAAGAAGA AAGTCGTGGA GGTATTCCGT TTCGCCGAGT GGGTGGCGAT CATTGAGGCG
ATGGAGGCGT ACTACCGGCC GGTGGCGAAG CTGATGGTCA TCACGGGCAT GATCGCCTCG
GAAATAGCGG CGCTTAAGAA GTCGCATGTA CGTGACGGCT ACTTGTACGT GCATCAATCC
ATCGTAAAGG GGGAAGAATC CGACGAACTC AAAACCGTGC ACCGGGAGCG GCGGATACTT
CTGACGAAAG CTTTAACGGA AATCCTTGAT GAGGCCGCGT CTAAGGCCTC AGGCGAGTAC
CTCTTCACTA TGGAAAACGG GATGACCTTC ACCGCTGAGA GGTTTCAGCG GCGGGTATGG
GTTAAGGCAT TGAAAAAAGC TGGCATAAAG TACCGGAAGC CCTACACGAC CAGGCACACA
TTCGCGGCGT GGGCTCTGGC GATCAGGACG GACCAGAACC GGCTGGTGAA CCTAATGGGG
CACGCCAGCA AGCAAATGAT TTTCGAAGTT TATGGCCGCT ACGTGGAGGG GCTGGAGCAG
GACCGCCTAA AGATCCTCGC CTACTTCGGG AGGGACTTCA AGCGGGGGAA ATAG
|
|---|
| Protein sequence | MQKFIASLKH RSGPTKGQPL SRARILNVLQ VFKTIWNDAI EEHRWNLPDP CRSLKRHLPK
KKKKVVEVFR FAEWVAIIEA MEAYYRPVAK LMVITGMIAS EIAALKKSHV RDGYLYVHQS
IVKGEESDEL KTVHRERRIL LTKALTEILD EAASKASGEY LFTMENGMTF TAERFQRRVW
VKALKKAGIK YRKPYTTRHT FAAWALAIRT DQNRLVNLMG HASKQMIFEV YGRYVEGLEQ
DRLKILAYFG RDFKRGK
|
|---|
| |